Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E08
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 73 5e-14
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 73 7e-14
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 73 7e-14
05_05_0268 + 23720837-23720914,23722398-23722486,23722669-237228... 27 2.6
01_04_0056 + 15476868-15476896,15477581-15478259 27 2.6
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 27 3.4
08_02_0311 - 15635165-15635590,15635777-15638698 27 4.5
08_02_0190 - 14037655-14038044,14038053-14038436 27 4.5
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 27 4.5
07_01_0281 - 2067696-2068862 26 7.8
06_03_0123 - 16924074-16926089 26 7.8
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336... 26 7.8
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 26 7.8
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167 26 7.8
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 72.9 bits (171), Expect = 5e-14
Identities = 32/55 (58%), Positives = 36/55 (65%)
Frame = +1
Query: 55 MGHANIWYHTHVDTGRVPRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 219
MGH+N+W + G R CR C N HGLIRKYGL CRQCFR A DIGF K+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 72.5 bits (170), Expect = 7e-14
Identities = 32/54 (59%), Positives = 35/54 (64%)
Frame = +1
Query: 55 MGHANIWYHTHVDTGRVPRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
MGH+N+W + G R CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 72.5 bits (170), Expect = 7e-14
Identities = 32/54 (59%), Positives = 35/54 (64%)
Frame = +1
Query: 55 MGHANIWYHTHVDTGRVPRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
MGH+N+W + G R CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>05_05_0268 +
23720837-23720914,23722398-23722486,23722669-23722807,
23722899-23722973,23723069-23723190,23723287-23723362,
23723786-23723845,23723939-23724091
Length = 263
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 12 FPSFGSRENKLILHHGSRKYLVSHPRRYGQGSPFMPSLL 128
FPS G +E +LHHG Y +S G+G ++ +L
Sbjct: 119 FPSLGGKE--YLLHHGLSMYAISLALLSGKGHVYILMVL 155
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 142 DHVCLSRLGMNGEPCPYLRGCDTRYLRDP*CKISLFSRDPKEGNTLV 2
D + + L E CP RG + +SLF R P+ GN+ V
Sbjct: 2 DQIFIYELKKFDEQCPTTRGVRVIFRNGKNIVLSLFRRQPQFGNSRV 48
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 122 PAQTDMVSFVNMA*ISAGSASESMRMILDLKSWTKLRFNKI 244
P+ DM + +++ A AS + ++LD +WT+ R+ ++
Sbjct: 585 PSSPDMAAACHLSYYCAYLASAAPELLLDSAAWTEKRYKEL 625
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +3
Query: 72 LVSH--PRRYGQGSPFMPSL 125
L SH PRR+G SPFM S+
Sbjct: 760 LTSHLVPRRFGNSSPFMASI 779
>08_02_0190 - 14037655-14038044,14038053-14038436
Length = 257
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 91 DTGRVPRSCRACSNRHGLIRKYGLNI-CR-QCFREYAHDI 204
+ GR+ R C++ + H + KY N+ C F YAH I
Sbjct: 109 ENGRITRQCQSLPSIHVIYLKYHRNVTCAFVAFEMYAHVI 148
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 79 HTHVDT-GRVPRSCRACSNRHGLIRKYGL 162
HT V+T GRVP S R +R L ++GL
Sbjct: 423 HTDVNTQGRVPTSMRPPVHRQNLCSRWGL 451
>07_01_0281 - 2067696-2068862
Length = 388
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 175 ACRYSSHIYE*DHVCLSRLGMNGEPCPYL 89
ACRYS E V R+G G PCP L
Sbjct: 340 ACRYSHGEEEQRIVPEMRVGGGGRPCPEL 368
>06_03_0123 - 16924074-16926089
Length = 671
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -2
Query: 127 SRLGMNGEPCPYLRGCDTRYLRDP-----*CKISLFSR 29
SR+G+ E C Y + T+Y +P C + LF+R
Sbjct: 522 SRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFAR 559
>05_05_0393 -
24632570-24632629,24633212-24633370,24633496-24633612,
24633697-24633831,24634140-24634337,24634449-24634529,
24634845-24635141,24635231-24636013,24636589-24636765
Length = 668
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 58 GHANIWYHTHVDTGRVPRSCRACSNRHGLIRKYGLNI 168
G ++Y HVD GRV + +A +I KY L +
Sbjct: 447 GDGKLFYGVHVDNGRV--AGQAKKTLREIIEKYNLEV 481
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 4 RGCFPLLGLEKTN*FYIMGHANIWYHTHVDTGRVPRS 114
+GC PL ++ N F+ A I + + GRVP S
Sbjct: 137 QGCLPLHRWDELNAFFQKSGAKIIFGLNALNGRVPMS 173
>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
Length = 314
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 96 RIYVGVIPDICVTHDVKLVCF 34
R+Y G IP I + H + L+CF
Sbjct: 174 RLYSGRIPGILMHHLILLICF 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,865,578
Number of Sequences: 37544
Number of extensions: 173086
Number of successful extensions: 393
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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