Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E08
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    81   2e-16
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    32   0.11 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    32   0.11 
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 34/56 (60%), Positives = 40/56 (71%)
 Frame = +1

Query: 55  MGHANIWYHTHVDTGRVPRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 222
           MG  N+W+      G   RSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 115 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 115 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  SFGSRENKLILHHGSRKYLVSHPRRYGQGSPFMPSLLKQTW 140
           +FG+ +N L+  +  +K+L   P RY    P +P      W
Sbjct: 149 TFGTVDNDLVCSNELKKHLHVLPSRYAINKPKLPIKYGYDW 189


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 45  ILHHGSRKYLVSHPRRYGQGSP 110
           +LH   R  L+S P+R+  GSP
Sbjct: 31  LLHPSLRGILLSRPKRWNSGSP 52


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 212 KSWTKLRFNKIFNVSEELFHFYENQINEPL 301
           K   KL+  K+    EEL H+Y  +I+E L
Sbjct: 510 KELEKLKSFKLDGYREELLHWYAKRISEEL 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,279
Number of Sequences: 27780
Number of extensions: 152158
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)