Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E07
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.063
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 30 0.15
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.34
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 27 0.77
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 27 1.0
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 1.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 1.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 2.4
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 25 3.1
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 4.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 4.1
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 25 4.1
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 5.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 5.5
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 5.5
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 25 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 5.5
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 24 7.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 24 7.2
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 24 7.2
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 24 9.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 9.5
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 31.1 bits (67), Expect = 0.063
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +2
Query: 44 AASAKSWRRGGAPGEKDKEESAWRTKGEY--KDPEKKSEPWRPSRAKEEKRDAPPREERA 217
A A + R E DKE K Y K PE + EPW+P +E R+
Sbjct: 98 AEQAAAERESKLQEESDKETPVMLNKSHYVAKTPEIQDEPWKPKFDWKESEPITDRKSTF 157
Query: 218 LA 223
+A
Sbjct: 158 MA 159
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.9 bits (64), Expect = 0.15
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 189 ATHRPERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEETEMTVDRETEMTADREIEM 365
++HRPERS + + V +K TA+ + AD E+ + +D +TE T D + M
Sbjct: 1462 SSHRPERSSE--KKSPSPVFTSVKQTAEND-----ADNEDDKTDMDDQTEETLDADNTM 1513
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 28.7 bits (61), Expect = 0.34
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -3
Query: 186 FSSFARLGRHGSDFFSGSLYSPLVLQADSSLSFSPGAPPRRQLLADAALLFFEHP 22
F SF H S F SGS +SP + + LS S APP A+ + LF P
Sbjct: 204 FDSFRISNSHISPFASGS-FSPFATSSPNFLSTSTPAPPNSN-NANPSTLFSSIP 256
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 0.77
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 141 KRNQSRGVLVVRRKRNATHRPERSVHWPRTTEMTVDLK--IKMTADQEQKETIADQEETE 314
KRNQ + KR A + E+ DL+ ++ D + E+ A QEETE
Sbjct: 15 KRNQELQEAKLNEKRRALRKALEG-----NKELNKDLQEDSQLQKDYKYDESRATQEETE 69
Query: 315 MTVDRETEMTADRE 356
+D E +RE
Sbjct: 70 TNLDDEYHRLGERE 83
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 201 PERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEETEMTVDRETEMTADRE 356
PE + W T+ + A+ E KET A E +++E E +E
Sbjct: 59 PEDDIDWGDMENDTISTDVNKPAEPESKETSAPAAAVE--IEKENESIISKE 108
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 86 EKDKEESAWRTKGEYKD 136
EKDKE S+W+ EY D
Sbjct: 746 EKDKEISSWKKASEYMD 762
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 1.8
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +3
Query: 90 KTKRNPPGEPKGNTRTPKRNQSRGVLVVRRKRNATHRPE--RSVHWPRTTEMTVDLKIKM 263
+T + +PK +T+ + VV +++ + + +S+ P+ E + ++
Sbjct: 865 RTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIK-PQKPEPALK-PVEG 922
Query: 264 TADQEQKETIADQEETEMTVDRETEMTADREIEMTAD 374
TAD K T + +ETE T D + T + + TAD
Sbjct: 923 TADP--KSTKRNHQETEKTADTDVSSTEPVKRQKTAD 957
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 2.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 41 SAASAKSWRRGGAPGEKDKEESAWRTKGEYKDPEKKSEPWRPSRAKEEKRDAPP 202
S+ S +WRRGGA +S ++G Y + S P R + A + PP
Sbjct: 874 SSPSPGAWRRGGASAGGVSRDSPRYSRGGY---SRGSVPPRETLAPSKGAYVPP 924
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 116 TKGEYKDPEKKSEPWRPSRAKEEKRDAPPREER 214
TKG Y EKK E R A+ E R+ R+++
Sbjct: 68 TKGGYLLEEKKVEDLREKPAERELREQEERQKK 100
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 4.1
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 102 NPPGEPKGNTRTPKRNQSRGVLVVRRKRNATHRPERSVHWPRTTEMT 242
+P P GN+RTP R+ S + R R + +R + S+ P++T T
Sbjct: 265 DPKVSPYGNSRTPLRDSSNYL----RDRRSINR-QSSLSIPKSTSET 306
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 231 TEMTVDLKIKMTADQEQKETIADQEETEMTVDRETEMTADREIE 362
T+ +DL TAD++Q D+EE+E R T+ + +E
Sbjct: 1883 TDQILDL-FNTTADEQQTVQNIDKEESEDAAGRGLSGTSKKALE 1925
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.1
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 210 SVHWPRTTEMTVDLKIKMTADQEQKETIADQEETEMTVDRETEMTADREIEMTADQEI 383
S P T VDL K T++Q+Q + Q T+ V+++T M D T D+EI
Sbjct: 165 STQKPIKTIGKVDLSNKSTSNQDQVDNTHVQNSTD-GVNQDTGMILDN----TEDKEI 217
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 204 ERSVHWPRTTEMTVDLKIKMTADQEQKETIADQE 305
ERS PRT ++ D ++T ++ + D+E
Sbjct: 17 ERSALTPRTAKILADAGFQITIERSSQRAFKDKE 50
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/57 (22%), Positives = 23/57 (40%)
Frame = +2
Query: 50 SAKSWRRGGAPGEKDKEESAWRTKGEYKDPEKKSEPWRPSRAKEEKRDAPPREERAL 220
S + RRGG +K S + + + W+P + E+ + +E AL
Sbjct: 946 SQRGSRRGGGERDKPDPSSLTIPVDQVAPLQLSANRWQPKKLTEKPAETKGEDEEAL 1002
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 90 KTKRNPPGEPKGNTRTPKRNQSRGVLVVRRKRNATHRPERS 212
K + P K NTRTP+R++ + R+ +T + +++
Sbjct: 580 KRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKN 620
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 234 EMTVDLKIKMTADQEQKETIADQEETEMTVDRETEMTAD 350
E VD+ K +++E+ E + +QEE ++ E E A+
Sbjct: 415 ETVVDMPTKQVSNKERLEILREQEE---LIEEEAEHVAE 450
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +3
Query: 237 MTVDLKIKMT--ADQEQKETIAD----QEETEMTVDRETEMTADREIEMTADQE 380
M+ D IK+T ++ K +A+ +EET+ V ET+ T+++++ T E
Sbjct: 538 MSADQPIKVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPE 591
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 144 FSGSLYSPLVLQADSSLSFSPGAPPRRQLLADAALLFFEHPLDIG 10
FSG L S S FS A ++LL+ +F +HP D+G
Sbjct: 620 FSGVLTSAGTTLLGLSWLFSGSA---QELLSSIIFVFVKHPYDVG 661
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 7.2
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 26 CSKNRSAASAKSWRRGGAPGEKDKEESAWRTKGEYKDPEKKSEPWRPSRAKEEKRDAPPR 205
CS + A GG P ++ +A K E K+P KS + E+K D
Sbjct: 121 CSGCKQLIEAYWNEHGGRPEPSKRKRTARPKKPEAKEPSPKSR-----KTDEDKHDKDSN 175
Query: 206 EE 211
E+
Sbjct: 176 EK 177
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 7.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 135 TPKRNQSRGVLVVRRKRNATHRPE--RSVHWPRTTEMTVDLKIKMTADQEQKETIADQE- 305
TP S + +N++ R + S++ ++ TVD +I TA Q +K + D+E
Sbjct: 278 TPSSLASVSTQATPQHQNSSGRTDSFHSLNTETPSKSTVDDQILSTAAQPKKSSDTDKEM 337
Query: 306 ETE 314
ETE
Sbjct: 338 ETE 340
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 255 IKMTADQEQKETIADQEETEMTVDRETEMTADREIEMTADQE 380
++ AD+E++E AD+ E E + E + + E + D E
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGE 211
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 89 KDK-EESAWRTKGEYKDPEKK 148
KDK E R K E KDPEKK
Sbjct: 23 KDKLERRKERAKEEEKDPEKK 43
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 246 DLKIKMTAD-QEQKETIADQEETEMTVDRETEMTADREIEMTADQEIEM 389
DL K+ + ++QK+ I Q+ T T+ E + + E+E+
Sbjct: 678 DLIAKLNKEVEDQKDVILSQKRTNETLKTEIDALQKSHVTQIQRSEVEL 726
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,158
Number of Sequences: 5004
Number of extensions: 18329
Number of successful extensions: 115
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -