Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E07
         (389 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    27   0.18 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   1.3  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    25   1.3  
AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding pr...    23   3.0  
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    23   3.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   3.9  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 129  TRTPKRNQSRGVLVVR-RKRNATHRPERSVHWPRTTEMTVDLKIKMTADQEQKETIADQE 305
            TR   RN +R    VR R+     RP      PRT+E   +++ +M A   Q+     Q+
Sbjct: 1049 TRNDLRNVARRTQTVRQREEQCGERPSMPSSSPRTSERRANIRARM-ARLRQRHRQHQQD 1107

Query: 306  E 308
            E
Sbjct: 1108 E 1108


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +3

Query: 174 RRKRNATHRPERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEETEMTVDRETEMTADR 353
           R  R    R +R        +   + + +   ++EQ+E    ++E E    RE E   +R
Sbjct: 472 RELREQREREQREKEQREKEQREKEERERQQREKEQREREQREKEREREAARERERERER 531

Query: 354 EIE 362
           E E
Sbjct: 532 ERE 534



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 17/85 (20%), Positives = 36/85 (42%)
 Frame = +3

Query: 132 RTPKRNQSRGVLVVRRKRNATHRPERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEET 311
           R  +R +      + R++    R +R        +   + + K   +++Q+E    +E  
Sbjct: 453 REEERAREAREAAIEREKERELREQREREQREKEQREKEQREKEERERQQREK-EQRERE 511

Query: 312 EMTVDRETEMTADREIEMTADQEIE 386
           +   +RE E   +RE E   ++E E
Sbjct: 512 QREKEREREAARERERERERERERE 536


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 270 DQEQKETIADQEETEMTVDRETEMTADREIEMTADQEIE 386
           +++++E  AD+EE + +   E+E + + E      +E+E
Sbjct: 82  EEQEEEAEADEEEADESESEESEESDELEEARLVAEELE 120


>AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding
           protein AgamOBP38 protein.
          Length = 336

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 236 LCRPWPMHAPLWAVRRVSLPSHD*DATA 153
           LC  WP    LW V +    S D DA A
Sbjct: 255 LCYGWPAFGELWEVLKQEYGSSD-DALA 281


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 201 PERSVHWPRTTEMTVDLKIKMTADQEQKETIADQ 302
           PE   H P    + V  KI +  D+E    +ADQ
Sbjct: 102 PEIKHHCPDAPIILVGTKIDLREDRETISLLADQ 135


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1209

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 195  HRPERSVHWPRTTEMTVDLKIKMTADQEQKETIA 296
            +RP+  V+  R    T+D+ I +T D   + T +
Sbjct: 1101 NRPDILVYEKRKKRATIDIDIAVTLDHNVQTTFS 1134


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,513
Number of Sequences: 2352
Number of extensions: 4648
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30356973
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)