Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E07
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    24   0.54 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   0.54 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.8  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 195 HRPERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEE 308
           H+P R    P TT+  + L+ K    ++Q  TIA++ E
Sbjct: 6   HKPNRKPRTPFTTQQLLSLEKKFR--EKQYLTIAERAE 41


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 92  DKEESAWRTKGEYKDPEKKSEPWRPSR 172
           D +E AW+T    K  +KKS   +P R
Sbjct: 416 DAQEPAWKTHVWKKGRDKKSTSKKPRR 442


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 183 RNATHRPERSVHWPRTTEM 239
           RN+   P +S  WP T+++
Sbjct: 578 RNSQQAPGQSPDWPSTSQI 596


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
 Frame = +3

Query: 30  RRTEVQHQXXXXXXXXXXXXKTKRNPPGEPKGNTRTPKRNQ--SRGVLVVRRKRNATHRP 203
           +RT++ H                 +P  +    T    R+   S+G+L       +T R 
Sbjct: 722 KRTDIIHNYIMRGEASPRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTTR- 780

Query: 204 ERSVHWPRTTEMTVDLKIKMTADQEQKETIADQEE 308
                WP T+ +T     +    Q+Q++    Q++
Sbjct: 781 -----WPATSVITTTTGARQQQQQQQQQQQQQQQQ 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,078
Number of Sequences: 438
Number of extensions: 1274
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)