Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E06
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    29   2.4  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z92782-4|CAB07186.1|  367|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    27   7.3  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    27   7.3  

>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 205 IFEMTFCPISISTAFEYFEVDNPNYLLGIINKFLIYIY*----FCWYTNIINEKWNVIYY 38
           IF  T+ PI +    +Y  V    + + +I  F I +      F      ++EKW +I +
Sbjct: 264 IFFATYMPIYLHQVLKY-SVQETGFYVAVILGFNIPLRLVSAAFSDRITFVSEKWKIIIF 322

Query: 37  NTIS 26
           NTIS
Sbjct: 323 NTIS 326


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 205 IFEMTFCPISISTAFEYFEV--DNPNYLLGIINKFLIYIY*FCWYTNII 65
           I  + FC I I+T      +  DN  YL  I   FL+Y Y FC Y+NI+
Sbjct: 12  IIALHFCGI-ITTFLPISSIFHDNFEYLNEIW--FLVYFYGFCVYSNIL 57


>Z92782-4|CAB07186.1|  367|Caenorhabditis elegans Hypothetical
           protein F14F8.5 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = -1

Query: 240 KKVFIIKSLSHIYLR*HFVLFRFPPHLNISKLTTLIIYWVSLINS*FTFINSVGIQILLM 61
           + +F I ++S I  R   + F  P    I  L+ L +Y++ L NS    +  + +  ++ 
Sbjct: 72  RMIFTIVTISPIIYR-EILSFCIPVTC-IPPLSYLEMYFIQLFNSLEIILTDLSVWFVVF 129

Query: 60  KNGTLFITIQYHVNKTVSS 4
                 + I+Y +NK +SS
Sbjct: 130 MTIFRALVIRYPLNKRISS 148


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 192 HFVLFRFPPHLNISKLTTL-IIYWVSLINS*FT 97
           H +LF+ P H+N SK++ L   +W  L++  F+
Sbjct: 48  HCILFKTPKHMNNSKVSLLNFHFWSCLLDIIFS 80


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 205 IFEMTFCPISISTAFEY 155
           +  + FCPISIST  EY
Sbjct: 166 VVSLVFCPISISTFLEY 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,143,615
Number of Sequences: 27780
Number of extensions: 155564
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)