Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E05
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    79   5e-16
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    76   3e-15
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   2.0  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   2.7  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   4.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   6.2  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   6.2  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   6.2  

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 44/101 (43%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
 Frame = +2

Query: 143 PNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIK-VHMHEDPIGFTLEFHFAAND 319
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+  ++  D  G+ LEF F +ND
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220

Query: 320 YFTNNILTKEYSMKCKPDDENPLEFEGPEIYS-CKGCDINW 439
           YFTN ILTK Y  K   DD +P    G  +Y   +G  INW
Sbjct: 221 YFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINW 255


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 44/109 (40%), Positives = 58/109 (53%)
 Frame = +2

Query: 26  DETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLC 205
           DE  +E++ +   A    + N+ K     ++K  E   D   KGIP+FW    +NV  L 
Sbjct: 126 DEPTEEEIKKGEAA----DENEKKEPTSSESKKQEGGDD--TKGIPEFWLTAMKNVLSLS 179

Query: 206 EMMQEHDEPILKCLQDIKVHMHEDPIGFTLEFHFAANDYFTNNILTKEY 352
           EM+   DE  L  L DI++   E P GF LEF FA N +FTN ILTK Y
Sbjct: 180 EMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTY 227


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 513 PSPSLCRRIPSSTSSAPPTCRRIL 584
           PS S+ RR PSS +  PP+  RIL
Sbjct: 392 PSSSINRRPPSSINQRPPSNLRIL 415


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 290 TLEFHFAANDYFTNNILTKEYSMKCKPDDENPL----EFEGPEIYSCKGCDIN 436
           T+ F   + D  T N  TK   +  + DDENPL    EF+ P + S    +IN
Sbjct: 84  TVNFKDISKDAATWNRPTKNNFLFTRLDDENPLMGHEEFKSPLLQSTPKPNIN 136


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 308 AANDYFTNNILTKEYSMKCKPDDENPLEFEGPE 406
           AA+D   N + T  Y  +   DD+  LEF  PE
Sbjct: 593 AAHDNALNELETLLYRAQAMVDDDEFLEFANPE 625


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 81   KEMMIKTNPVKTT-SLLSPGWIRMSRESPTSGTIYLETFQCCAR 209
            K+  +K+NPV     L+     R+    PT+ T+Y +  Q C R
Sbjct: 1037 KQHDVKSNPVAVELGLVRHPSERLGFALPTADTVYEQAIQLCER 1080


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 11  LNPWRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPD 166
           + P  DE E+E+ A  ++     EG  D+ +  ED+   +   D + +G  D
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGEND 221


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 189 FLNILYQKSGIPLTFGSIR 133
           +LNIL +KSG+P + G ++
Sbjct: 299 YLNILVKKSGMPFSLGVVQ 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,427
Number of Sequences: 5004
Number of extensions: 46905
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)