Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E05
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 83 1e-16
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 80 1e-15
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 77 8e-15
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 75 4e-14
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 62 4e-10
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 52 3e-07
04_01_0345 + 4529272-4530514,4530634-4530740 32 0.30
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 28 4.8
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 28 6.3
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373... 27 8.4
08_02_1490 + 27495155-27495334,27495437-27495746,27495865-274959... 27 8.4
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567... 27 8.4
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 8.4
01_07_0105 - 41104655-41104851,41105818-41107150 27 8.4
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 83.4 bits (197), Expect = 1e-16
Identities = 44/105 (41%), Positives = 64/105 (60%)
Frame = +2
Query: 74 INEGNDDKNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQD 253
++ GND+ P +N +AE + D + KG+PDFW + +L E +QE DEP LK L+D
Sbjct: 111 VDGGNDE---PASEN-AAEGK-DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKD 165
Query: 254 IKVHMHEDPIGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPL 388
IK +DP GF L+F F N +F N++LTK Y M D++ P+
Sbjct: 166 IKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHM---VDEDEPI 207
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/100 (41%), Positives = 58/100 (58%)
Frame = +2
Query: 89 DDKNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHM 268
D K D AE + + KG+P+FW N +N +L E +QE DE LK L+DIK +
Sbjct: 111 DGVTKEAADETPAEQKEE---KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYR 167
Query: 269 HEDPIGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPL 388
+P GF LEF+F N +F N++LTK Y M D++ P+
Sbjct: 168 ISEPKGFKLEFYFDTNPFFKNSVLTKTYHM---IDEDEPI 204
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 77.4 bits (182), Expect = 8e-15
Identities = 39/80 (48%), Positives = 47/80 (58%)
Frame = +2
Query: 152 KGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDPIGFTLEFHFAANDYFTN 331
KG+PDFW N +N +L E + E DE LK L+DIK +DP GF EF F N +F N
Sbjct: 208 KGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTNPFFKN 267
Query: 332 NILTKEYSMKCKPDDENPLE 391
+LTK Y M DDE LE
Sbjct: 268 QVLTKTYHM-IDEDDEPILE 286
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 74.9 bits (176), Expect = 4e-14
Identities = 38/80 (47%), Positives = 46/80 (57%)
Frame = +2
Query: 152 KGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDPIGFTLEFHFAANDYFTN 331
KG+PDFW +N +L E + E DE LK L+DIK +DP GF EF F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 332 NILTKEYSMKCKPDDENPLE 391
+LTK Y M DDE LE
Sbjct: 163 QVLTKTYHM-IDEDDEPILE 181
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 61.7 bits (143), Expect = 4e-10
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Frame = +2
Query: 35 EDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMM 214
E +D V A ++ + + K E + R + +K IPDFW F + ML E++
Sbjct: 34 EIQDEIEKVNEEACDKVLELEQKYNEVRRPVYVRRNKIIKQIPDFWLTAFLSHPMLGELL 93
Query: 215 QEHDEPILKCLQDIKVHMHED-PIGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPLE 391
E D+ I K L+ I V ED G+++ F+ N YF + LTK YS D+ ++
Sbjct: 94 TEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYFEDTKLTKTYSF----SDDEAVK 149
Query: 392 FEGPEIYSCKGCDI 433
+ I KG DI
Sbjct: 150 VKATSIRWKKGMDI 163
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +2
Query: 35 EDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMM 214
E +D V A ++ + + K E + R ++ IPDFW F + +L E++
Sbjct: 39 EIQDELEKVNEEASDKVLEVEQKYSEIRRPVYLRRSDVIQTIPDFWLTAFLSHPLLSELL 98
Query: 215 QEHDEPILKCLQDIKVHMHED-PIGFTLEFHFAANDYFTNNILTKEYS 355
E D+ + K L+ + V +D G+++ F+ N YF + LTK Y+
Sbjct: 99 TEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYFEDKELTKTYA 146
>04_01_0345 + 4529272-4530514,4530634-4530740
Length = 449
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 21 GGMKRKMKILHGPSKPPPLMKEMMIKTNPVKTTSLLSPGWIRMSRESP 164
GG +R++ I++GP +PPPL++ ++P+ S+ G +R P
Sbjct: 265 GGGQRRLSIVYGPPRPPPLIE----SSSPIFMMSMGDDGVLRCVEVEP 308
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 17 PWRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNVKGIPDFWY 175
P+ + +DE + + E + KN+P + E P +KG PD W+
Sbjct: 241 PFMVQVKDEAAMNGLSDDCLKEDSPGKNEPNHKSNLVENSDKPVMKG-PDGWW 292
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 164 DFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDP 280
DF+++ R+V +LC+ + PI+ + + +DP
Sbjct: 216 DFYFSKLRDVEILCQSPEVEHLPIVNAIHKVLYAAEDDP 254
>10_01_0340 -
3734116-3734178,3734212-3734300,3734785-3734844,
3736188-3736245,3736507-3736893,3736942-3737615,
3739154-3739203,3739903-3739943,3740721-3740860,
3740903-3741183,3741405-3741613
Length = 683
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 57 PSKPPPLMKEMMIKTNPVKTTSLLSPGWIR---MSRESPTSGTIYLETFQ 197
P PP LM+ ++ + TS++S W+R +S E G +Y T +
Sbjct: 429 PLPPPDLMELGFLRETVRELTSIMSDEWLREAELSYEGNDIGILYSPTIE 478
>08_02_1490 +
27495155-27495334,27495437-27495746,27495865-27495965,
27496620-27496661,27496763-27496884,27496954-27497062,
27497309-27497362
Length = 305
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 8 GLNPWRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPN 148
GL+ WR D+D ++ +DD+++ G+D + A +DP+
Sbjct: 160 GLSDWRVMDHDDDDVDDDDDEDDDDDDDDEDEDGDDPQDAWEDVDPD 206
>04_04_0287 -
24156285-24156389,24156477-24156596,24156654-24156740,
24156905-24157057,24157516-24157635,24157788-24157949,
24158029-24158247,24158574-24158616,24159147-24159210,
24159353-24159458,24159585-24159704,24159831-24159911,
24160008-24160050,24160308-24160369,24160477-24160563,
24161004-24161050,24161144-24161276,24161419-24161487,
24161924-24162010,24162317-24162448
Length = 679
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 20 WRDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPNV 151
W + +EDED N+ DD N+ ED++ ++ + NV
Sbjct: 491 WLEISEDEDDEDDDDDDNENDSEDDANQTDEDDEESDEDAEKNV 534
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 35 EDEDLARAVQATAINEGNDDKNKPGEDNK 121
+DE+ + + A+ +E +D+ N P ED+K
Sbjct: 549 DDENSSTSGSASVSSESDDESNSPSEDSK 577
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 23 RDETEDEDLARAVQATAINEGNDDKNKPGEDNKSAEPRMDPN 148
+++ +DE +A A A+ E +DD+ ED+ + PN
Sbjct: 211 KNKNDDEVVATATMEAAVEEEDDDEAALAEDDDDDDDDEQPN 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,673
Number of Sequences: 37544
Number of extensions: 344056
Number of successful extensions: 1059
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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