Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_E04
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 345 2e-95
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 339 7e-94
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 177 7e-45
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 173 1e-43
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 45 5e-05
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 35 0.051
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 31 0.48
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL132865-7|CAB60598.1| 234|Caenorhabditis elegans Hypothetical ... 29 3.4
AL021066-2|CAH10790.1| 124|Caenorhabditis elegans Hypothetical ... 29 3.4
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 28 4.5
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 28 4.5
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 28 5.9
Z32683-10|CAA83625.1| 381|Caenorhabditis elegans Hypothetical p... 27 7.8
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 345 bits (847), Expect = 2e-95
Identities = 153/198 (77%), Positives = 176/198 (88%)
Frame = +3
Query: 9 INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSP 188
I EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV ES+Q+CLSKSP
Sbjct: 531 IFEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVQSESNQICLSKSP 590
Query: 189 NKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEG 368
NKHNRL AQPMP+GL +DI+ G VN RD+FK RA+ L++KYEYD+TEARKIWCFGP+G
Sbjct: 591 NKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDG 650
Query: 369 TGPNILVDCSKGVQYLNEIKDSVVAGFQWAANECAMAEENLRGVRFNIYDVTLHTDAIHR 548
TGPN+L+D +KGVQYLNEIKDSVVAGFQWA E +++EN+RGVRFN++DVTLH DAIHR
Sbjct: 651 TGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHR 710
Query: 549 GGGQIIPTTRRCLYACLL 602
GGGQIIPT RR YA +L
Sbjct: 711 GGGQIIPTARRVFYASVL 728
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 339 bits (834), Expect = 7e-94
Identities = 151/198 (76%), Positives = 174/198 (87%)
Frame = +3
Query: 9 INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSP 188
I EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV ES+Q+CLSKSP
Sbjct: 531 IFEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVQSESNQICLSKSP 590
Query: 189 NKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEG 368
NKHNRL AQPMP+GL +DI+ G V+ RD+FK RA+Y +KYEY +TEARKIWCFGP+G
Sbjct: 591 NKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARKIWCFGPDG 650
Query: 369 TGPNILVDCSKGVQYLNEIKDSVVAGFQWAANECAMAEENLRGVRFNIYDVTLHTDAIHR 548
TGPN+L+D +KGVQYLNEIKDSVVAGFQWA E +++EN+RGVRFN++DVTLH DAIHR
Sbjct: 651 TGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHR 710
Query: 549 GGGQIIPTTRRCLYACLL 602
GGGQIIPT RR YA +L
Sbjct: 711 GGGQIIPTARRVFYASVL 728
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 177 bits (430), Expect = 7e-45
Identities = 84/204 (41%), Positives = 128/204 (62%), Gaps = 4/204 (1%)
Frame = +3
Query: 3 TRINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSK 182
TR+ EESGEH++ G GE +++ + D+ + + I IK +DPVV++ ETV E S C ++
Sbjct: 623 TRV-EESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAE 681
Query: 183 SPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGP 362
+PNK N++ M A+P+ + L EDI++ V + + + KY +DL AR IW FGP
Sbjct: 682 TPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGP 741
Query: 363 EGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAANECAMAEENLRGVRFNIYDVTLH 530
+ TGPNIL+D L+ +++S+V GFQWA E + EE +R V+F + D +
Sbjct: 742 DTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIA 801
Query: 531 TDAIHRGGGQIIPTTRRCLYACLL 602
T+ ++RGGGQ+IPT RRC Y+ L
Sbjct: 802 TEPLYRGGGQMIPTARRCAYSAFL 825
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 173 bits (420), Expect = 1e-43
Identities = 83/204 (40%), Positives = 127/204 (62%), Gaps = 4/204 (1%)
Frame = +3
Query: 3 TRINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSK 182
TR+ EESGEH++ G GE +++ + D+ + + I IK +DPVV++ ETV E S C ++
Sbjct: 498 TRV-EESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAE 556
Query: 183 SPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGP 362
+PNK N++ M A+P+ + L EDI++ V + + + KY +DL AR IW FG
Sbjct: 557 TPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGL 616
Query: 363 EGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAANECAMAEENLRGVRFNIYDVTLH 530
+ TGPNIL+D L+ +++S+V GFQWA E + EE +R V+F + D +
Sbjct: 617 DTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIA 676
Query: 531 TDAIHRGGGQIIPTTRRCLYACLL 602
T+ ++RGGGQ+IPT RRC Y+ L
Sbjct: 677 TEPLYRGGGQMIPTARRCAYSAFL 700
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +3
Query: 18 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEES 161
E+GE + AGE+HL+ C+KDL D + + S+P+V + ETV E+S
Sbjct: 513 ENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEPIVPFMETVIEDS 559
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +3
Query: 18 ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEES 161
E+GE + AGE+HL+ C+KDL D + + S+P+V + ETV E+S
Sbjct: 513 ENGELAMVTAGEVHLQKCIKDL-NDLGLVDLDVSEPIVPFMETVIEDS 559
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +3
Query: 12 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 143
N+E+ E IV+G GELHLEI + ++ ++ C P++ P V+YRE
Sbjct: 482 NQEAKETIVSGMGELHLEIYAQRMKSEYNC-PVELGKPTVAYRE 524
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 34.7 bits (76), Expect = 0.051
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 96 ACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPR 275
AC+PI VS E S+ES+ K +K + +KA + +G+P D DDG +
Sbjct: 228 ACLPISVKCDGVSDCENESDESNCNKCQKGAHKCGKNCIKASKVCDGIP-DCDDGSDEHQ 286
Query: 276 DDFKT 290
D KT
Sbjct: 287 CDCKT 291
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 31.5 bits (68), Expect = 0.48
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 6 RINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEE 158
R + ++G+ IV GELHLE +KD + + + + V+YRE ++EE
Sbjct: 427 RFDRDTGQTIVETQGELHLE-AIKDRLKRNYKLDVFIGKLQVAYREMLTEE 476
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +3
Query: 36 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMK 215
V GA E+ LE ++ + D A I + PVV+ R ++ ++S +
Sbjct: 293 VTGAAEI-LEFPEEEKKIDMATIHRTPTPPVVASRPATAKAPGTPA-NRSATALEAKSVS 350
Query: 216 AQPMPEGLPEDIDDGKVNPRDD 281
QP PE E+ D+G + DD
Sbjct: 351 QQPTPESSEEEEDEGNGDEDDD 372
>AL132865-7|CAB60598.1| 234|Caenorhabditis elegans Hypothetical
protein Y62E10A.10 protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 252 DDGKVNPRDDFKTRARYLSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKD 431
++G+ P+ F R +YL + L++A++ GP P+ + + KG +N I
Sbjct: 61 ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPMDPSQMTEMLKG-NMMNMIPM 119
Query: 432 SVVAGF 449
VV G+
Sbjct: 120 IVVGGW 125
>AL021066-2|CAH10790.1| 124|Caenorhabditis elegans Hypothetical
protein H31B20.2 protein.
Length = 124
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 141 ETVSEESDQMCLSKSPNKHNRLFMKAQPMPEGLPEDIDDGKVNPRDDF 284
E V +E D+M ++ P+K + L ++ Q + D D+ K DDF
Sbjct: 78 EFVEQEEDEMIRTEGPSKASELPIREQSKRKEAVSDADESK-QDEDDF 124
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 105 PIKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLFMKAQPMPE 233
P S+ V + R+T E+ Q ++K+P+ N ++ P+PE
Sbjct: 1626 PGPTSEHVATIRKTPVRETHQSSITKAPSLENVAKIRQSPVPE 1668
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 419 RDQGLGRRRVPVGRQ*MRHGR 481
R Q L RRR PVGR +RH R
Sbjct: 197 RHQPLLRRRTPVGRNQLRHSR 217
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 190 LGDLDKHIWSDSSLTVSRYDTTGSDFLIGMQAWSSSRSLRQ 68
+G+L + + S SS SR+D T D + A SS+ + R+
Sbjct: 624 MGELQRPVTSQSSRKSSRWDVTEEDLKRKLSATSSTHNPRE 664
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 190 LGDLDKHIWSDSSLTVSRYDTTGSDFLIGMQAWSSSRSLRQ 68
+G+L + + S SS SR+D T D + A SS+ + R+
Sbjct: 624 MGELQRPVTSQSSRKSSRWDVTEEDLKRKLSATSSTHNPRE 664
>Z32683-10|CAA83625.1| 381|Caenorhabditis elegans Hypothetical
protein R07E5.3 protein.
Length = 381
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 303 LSDKYEYDLTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAANECAMAE 482
L D++E+D+++ PE NI + G ++++ I S+ QW A +E
Sbjct: 271 LVDQFEWDMSDPNN----SPEEFSRNICKELGLGGEFMSGIAYSIRGQLQWNQRTYAFSE 326
Query: 483 ENLRGV 500
L V
Sbjct: 327 SPLATV 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,351
Number of Sequences: 27780
Number of extensions: 264403
Number of successful extensions: 938
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -