Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E01
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    31   0.11 
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    27   1.8  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    26   3.1  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   7.2  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   9.5  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    24   9.5  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    24   9.5  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    24   9.5  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         24   9.5  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 256 FLEIRNSYISQYYCTYYSKLKFVSLYVAMNLQNY-LSDLEKAFINMNITSYIDYV 95
           FL + N Y+    C Y+     + L+V +NL +Y  SD +K+   + +  ++  V
Sbjct: 366 FLNVANKYLPNSVCIYHVPRAGLFLWVELNLNHYRFSDTKKSVSQIEMEIFLALV 420


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 256 FLEIRNSYISQYYCTYYSKLKFVSLYVAMNLQNYL 152
           FL I    ISQ    Y+  L+ V L+V++ L NYL
Sbjct: 348 FLVIVGWIISQPLTLYFESLETVILFVSVFLVNYL 382


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 360 PPYLLHWGTSVSLMQ*VRVVRKCISPRQKKNVI 262
           PPY    G S +      V+ KC+ P Q+ N I
Sbjct: 39  PPYSFVAGLSKNTSSNSFVIHKCLPPLQRNNTI 71


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 411 RFMSGRVPHWHGVRPSVPPYLLHWGT 334
           +F S  + +W+GV+P+V   L   GT
Sbjct: 5   KFYSDAIDYWNGVQPTVDGMLGGLGT 30


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 256  FLEIRNSY-ISQYYCTYYSKLKFVSLYVAMNLQNYLSDLEKAFINM 122
            F+E+  ++ I+    T  +  +FV  Y A N+   +   E  F+NM
Sbjct: 1588 FVELPGTHGITHGMYTSAAARRFVETYAAQNVPERVKHYEVTFVNM 1633


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 400 RASPTLARS---SSLRAPLPIALGDFGL 326
           R  P LAR    S L  P+P+AL DF L
Sbjct: 34  RLLPILARQYVMSMLFNPMPVALSDFDL 61


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = -3

Query: 253 LEIRNSYISQYYCTYYSKLKFVSLYVAMNLQNY---LSDLEKAFINMN---ITSYI--DY 98
           L+ +N+ +  Y   YY  L F ++     +QNY   L  +++AF   N   + S I   Y
Sbjct: 239 LDPKNTVVDTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERY 298

Query: 97  VFF*SKFILKLKHKKSRVFNKSSNSII 17
           V+    +   +K  ++ + N  S+S+I
Sbjct: 299 VYSKKNYEGCIKLAENVIQNSFSSSLI 325


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 136 PFPNRISSSEDSLPHTN 186
           P PN +S +EDS P+ N
Sbjct: 450 PSPNSVSFTEDSRPNVN 466


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 393 VPHWHGVRPSVPPYLLHW 340
           +P +H  +PS+ P++  W
Sbjct: 353 IPDYHSRKPSLKPFISRW 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,907
Number of Sequences: 5004
Number of extensions: 46279
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)