Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E01
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711...    29   2.3  
11_07_0010 - 27334177-27334337,27334479-27334560                       28   3.1  
09_02_0271 + 6540287-6540368,6540510-6540670                           28   3.1  
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130...    27   7.1  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    27   7.1  
09_02_0331 - 7324332-7325924,7327220-7327402                           27   9.3  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     27   9.3  
01_07_0039 - 40667598-40669880                                         27   9.3  

>03_05_0190 -
           21770610-21770641,21770741-21770811,21771058-21771168,
           21771249-21771500,21771584-21772086,21772188-21773234,
           21773361-21773768,21773814-21773956,21774020-21774053
          Length = 866

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 421 YFRTLHVRASPTLARSSSLRAPLPI 347
           Y +TL +R +P   R  SLR PLP+
Sbjct: 548 YLKTLLLRKTPRCKRPRSLRRPLPV 572


>11_07_0010 - 27334177-27334337,27334479-27334560
          Length = 80

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 407 SCPGESHTGTEFVPPCPLTYCIGGLRSH 324
           SC G+  T T+ VP C +  C    R+H
Sbjct: 24  SCYGDEETFTDEVPHCKIVACTNKCRTH 51


>09_02_0271 + 6540287-6540368,6540510-6540670
          Length = 80

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 407 SCPGESHTGTEFVPPCPLTYCIGGLRSH 324
           SC G+  T T+ VP C +  C    R+H
Sbjct: 24  SCYGDEETFTDEVPHCKIVACTNKCRTH 51


>04_04_0918 -
           29411239-29411373,29412276-29412526,29412772-29413009,
           29413133-29414251,29414540-29415106
          Length = 769

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = -3

Query: 310 KGSA*MHFPPSKKKCNIYFLEIRNSYISQYYCTYYSKLKFVSLYVAMNLQNYLSDLEKAF 131
           +G +   +  ++K+ N  + E+R  +    +    S +  V+    ++L   L D  K F
Sbjct: 367 EGDSLTFYSYTRKRFNATYPELRRCFKEVLFHVPKSTILEVNYNNIISLLELLEDFNKKF 426

Query: 130 INMNITSYIDYVF 92
           +N NI   +  +F
Sbjct: 427 MNKNIEDEVKGIF 439


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 326 ETEVPQCNR*GGTEGRTPCQCGTRPDMKRPEIPTKTPRGRPP 451
           +T  P+ N+     G  P   G  P    P++P   P+  PP
Sbjct: 241 KTRQPEANKPPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPP 282


>09_02_0331 - 7324332-7325924,7327220-7327402
          Length = 591

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 352 VRGHGGTNSVPVWDSPGHEASGNTH*NPPGPSA 450
           V G+GGT ++ +   PG ++S  ++ +P  P A
Sbjct: 67  VIGNGGTKAIVIDVEPGDDSSPTSNGSPAAPEA 99


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 371 RTPCQCGTRPDMKRPEIPTKTPRGRPP 451
           R P Q G    M+RP  P  TPRG PP
Sbjct: 181 RRPAQ-GPGFYMQRPPTPPPTPRGFPP 206


>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 286 PPSKKKCNIYFLEIRNSYISQYYCTYYSKLK 194
           P  +KK   Y +EI NSY+    CT    +K
Sbjct: 404 PGMRKKSTFYVVEILNSYLKGSGCTVAQLVK 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,466
Number of Sequences: 37544
Number of extensions: 308213
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)