Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_E01
         (453 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night...    27   8.9  
AE013599-1158|AAF58763.4| 3574|Drosophila melanogaster CG11895-P...    27   8.9  
AB028498-1|BAA84069.1| 3575|Drosophila melanogaster Flamingo pro...    27   8.9  

>AF172329-1|AAF02618.1| 3579|Drosophila melanogaster starry night
            protein protein.
          Length = 3579

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 437  GGF*WVFPDASCPGESHTGTEFVPPCPLTYCIGGL 333
            GG+  V P         TG   + PCP   C GGL
Sbjct: 1502 GGYTCVCPSTHTGQNCETGVGHLRPCPSETCEGGL 1536


>AE013599-1158|AAF58763.4| 3574|Drosophila melanogaster CG11895-PA
            protein.
          Length = 3574

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 437  GGF*WVFPDASCPGESHTGTEFVPPCPLTYCIGGL 333
            GG+  V P         TG   + PCP   C GGL
Sbjct: 1502 GGYTCVCPSTHTGQNCETGVGHLRPCPSETCEGGL 1536


>AB028498-1|BAA84069.1| 3575|Drosophila melanogaster Flamingo protein.
          Length = 3575

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 437  GGF*WVFPDASCPGESHTGTEFVPPCPLTYCIGGL 333
            GG+  V P         TG   + PCP   C GGL
Sbjct: 1503 GGYTCVCPSTHTGQNCETGVGHLRPCPSETCEGGL 1537


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,879,837
Number of Sequences: 53049
Number of extensions: 525612
Number of successful extensions: 1116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)