Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D23
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    66   9e-13
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   1.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   2.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   2.8  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   2.8  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    24   3.7  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    24   3.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   4.9  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    24   4.9  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    23   6.5  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    23   8.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    23   8.5  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    23   8.5  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 66.1 bits (154), Expect = 9e-13
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = +3

Query: 63  MGHANIWHSHPRRYGQCSRSCRACSNRHGLIRKYGLNICRQCFR 194
           M H N+W SHPR+YG+ SR C     R GLIRKYGLNI RQ FR
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFR 44


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 116 PFMPSLLKQTWSHS*IWLEYLQ 181
           PF  S L++TW++   W E LQ
Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 5   EDFDRVPSFGSRENKLILHHGSRKYL 82
           EDFD  P+ GSR  +++    S  Y+
Sbjct: 209 EDFDDAPTKGSRHKRIVSDDESDDYV 234


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 232  SPAF*IQYHAHTLRKHCLQIFKPYLRMRPCLFEQARH 122
            S  F + YH HT RK   Q+F     + P  +++ +H
Sbjct: 1055 SRGFEVMYHGHTGRKLVAQVF-----LGPTYYQRLKH 1086


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 186 TACRYSSHIYE*DHVCLSRLGMNGNTARIYVGVNARYLRDP*CKISLFSRDPKEGTRSKS 7
           TA R  S I       + R+ +  +  R  +G N +Y+R    K S+  R P+E   S S
Sbjct: 782 TAARIKSQIEALIDDTILRVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNS 841

Query: 6   S 4
           +
Sbjct: 842 T 842


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 119 TGTLPVSTWV*MP-----DICVTHDVKLVCFLETQKREHDQN 9
           TGTLP + W+  P     D+  T   +L  ++E Q    D N
Sbjct: 303 TGTLPQAPWITFPVPHRADLSRTQKSELFPYIENQGNLRDWN 344


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 116 PFMPSLLKQTWSHS*IWLEYLQAVLPESMRMILDLKSWTKLGFNKF 253
           P +PS+   T+S      + L+++LP S +  L +     +G N F
Sbjct: 30  PCVPSVCTITYSRFHCLPDTLKSLLPMSSKTTLSMLPQVNIGANSF 75


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 122 MPSLLKQTWSHS*IWLEYLQAVLPESMRMILDLKSWT 232
           +P  +KQ WSH+  ++     + P ++ ++L+ K+ T
Sbjct: 491 LPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAAT 527


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 27  LLGLEKTN*FYIMGHANIWHSHPRRY 104
           + G +K N FY +   N W+    RY
Sbjct: 234 IYGFKKANQFYTVDQYNTWYGPYSRY 259


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 87  SHPRRYGQCSR 119
           SHP+ +GQCS+
Sbjct: 117 SHPQAFGQCSK 127


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 50  LILHHGSRKYLAFTPT*IRAVFPFMPSLLKQTWSHS*IWLEYLQAVLPESMRMILDLKSW 229
           L+  H + + LA  P   + V P++   ++     +    EY  A+ P+S+R +  L S+
Sbjct: 183 LVWRHDNEESLANIPV-TQLVNPYIEKAIQYLRPLAQDSTEYFDALTPDSLRPLYILSSY 241


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 75  NIWHSHPRRYGQCSRSCR 128
           N W  H R++ +C R CR
Sbjct: 486 NKWEEHSRQFAKC-RRCR 502


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 111 CSRSCRACSNRHGLIRKYGLNICRQCFRR 197
           C  +CRA  N +   +  G + C  C R+
Sbjct: 104 CCSNCRAFINSNAFGKFKGQHYCLPCLRK 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,048
Number of Sequences: 5004
Number of extensions: 24827
Number of successful extensions: 74
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)