Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D23
(286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 81 2e-16
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 81 2e-16
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 81 2e-16
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503... 32 0.082
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 28 1.0
02_04_0471 + 23192001-23192102,23192229-23192356,23192440-231931... 28 1.0
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 1.8
07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778... 26 5.4
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 26 5.4
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 25 7.1
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 25 9.4
06_01_0769 - 5745324-5746970 25 9.4
03_06_0350 - 33306753-33307060,33307133-33307193,33307283-333074... 25 9.4
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 25 9.4
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 25 9.4
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 80.6 bits (190), Expect = 2e-16
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +3
Query: 63 MGHANIWHSHPRRYGQCSRSCRACSNRHGLIRKYGLNICRQCFR 194
MGH+N+W+SHP+ YG SR CR C N HGLIRKYGL CRQCFR
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFR 44
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 80.6 bits (190), Expect = 2e-16
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +3
Query: 63 MGHANIWHSHPRRYGQCSRSCRACSNRHGLIRKYGLNICRQCFR 194
MGH+N+W+SHP+ YG SR CR C N HGLIRKYGL CRQCFR
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFR 44
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 80.6 bits (190), Expect = 2e-16
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +3
Query: 63 MGHANIWHSHPRRYGQCSRSCRACSNRHGLIRKYGLNICRQCFR 194
MGH+N+W+SHP+ YG SR CR C N HGLIRKYGL CRQCFR
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFR 44
>01_05_0342 -
21147940-21148213,21149626-21149697,21150273-21150397,
21150625-21150684,21150824-21150902,21151041-21151126,
21151224-21151544
Length = 338
Score = 31.9 bits (69), Expect = 0.082
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 KQTWSHS*IWLEYLQAVLPESMRMILD-LKSWTKLG 241
K +S+S IW E+ A+LP+ + +I D L+SW +G
Sbjct: 136 KFDFSNSYIWFEFYHALLPKDVTLICDALRSWHIVG 171
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 39 EKTN*FYIMGHANIWHSHPRRYGQCSRSCRACSNRHGLIRKYG 167
E+T+ F GH+ + H R Y C ++ R S + YG
Sbjct: 506 EETDFFEDTGHSEVNLYHGRTYSSCLKATRDFSRSYSYFNDYG 548
>02_04_0471 +
23192001-23192102,23192229-23192356,23192440-23193108,
23193900-23194086
Length = 361
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 93 PRRYGQCSRSCRACSNRHGLIRKYGLNICRQCFRRV 200
P R GQC R C++R GL+ + + C RRV
Sbjct: 231 PPRTGQCCRMASPCAHRRGLL-QLARHFFAGCGRRV 265
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 78 IWHSHPRRYGQCSRSCRACSNRHGLIRKYGLNICRQC 188
IWH R+G + C NR GL+ +G C
Sbjct: 369 IWHC---RFGHINEKCMEKLNRDGLLHSFGFESFETC 402
>07_01_0927 -
7784564-7784656,7785182-7785225,7785946-7785970,
7786357-7786497,7786590-7786619,7786686-7786762,
7786816-7786855,7787055-7787122,7787782-7789864
Length = 866
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 104 RAVFPFMPSLLKQTWSHS*IWLEYLQAVLPESMRMILDLKSW---TKLGFN 247
R +FPF+ + W+ W+ +Q +L M + SW TKLG N
Sbjct: 813 RVLFPFLQAECLDLWAKILNWVIQVQQILNSEMCQRGLMGSWLFFTKLGKN 863
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 137 KQTWSHS*IWLEYLQAVLPESMRMILDLKSWTKLGFNKFLM 259
+Q W+ S + L + A+LP++ ++L + K+G NK L+
Sbjct: 318 EQAWN-SFVLLFFSCAMLPKTADLVLFVGKHDKMGMNKILL 357
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 40 RKQTNFTSWVTQISGIHTHVDTGSVPVHAEPAQT 141
R+ ++FTSWV + + G P A P Q+
Sbjct: 755 RRLSSFTSWVPDLRRVWALKHPGKEPAAAAPPQS 788
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 108 QCSRSCRACSNRHGLIRKYGLNI--CRQC 188
QC R R+ +++HG+ N CRQC
Sbjct: 3453 QCPRCSRSVTDKHGICSNCHENAYQCRQC 3481
>06_01_0769 - 5745324-5746970
Length = 548
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -1
Query: 169 KPYLRMRPCLFEQARHERE---HCPYLRGCE 86
+P L P L +AR +R+ H P+LR CE
Sbjct: 508 EPCLHSPPPLVCRARRDRDPAAHLPFLRHCE 538
>03_06_0350 -
33306753-33307060,33307133-33307193,33307283-33307458,
33307551-33307608,33307730-33307834,33307924-33307981,
33308072-33308238
Length = 310
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 105 GQCSRSCRACS 137
GQC +SC ACS
Sbjct: 299 GQCQKSCNACS 309
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 95 T*IRAVFPFMPSLLKQTWSH 154
T +R + PFMP + ++ W H
Sbjct: 819 TGLRLLHPFMPYITEELWQH 838
>02_05_0877 +
32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 123 CRACSNRHGLIRKYGLNICRQCFRRVCA 206
C C +HG+ + CR F +CA
Sbjct: 418 CSICKVKHGVCVRCSHGTCRTPFHPICA 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,880,496
Number of Sequences: 37544
Number of extensions: 155880
Number of successful extensions: 351
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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