Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D23
         (286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    77   2e-15
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    29   0.41 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    29   0.41 
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    28   0.94 
Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical pr...    26   3.8  
U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative transc...    26   3.8  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-lik...    25   6.6  
Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z48544-8|CAA88441.1|  109|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    25   8.7  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    25   8.7  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 29/44 (65%), Positives = 36/44 (81%)
 Frame = +3

Query: 63  MGHANIWHSHPRRYGQCSRSCRACSNRHGLIRKYGLNICRQCFR 194
           MG  N+W SHPR++G  SRSCR C+  HGLIRKYGL++CR+CFR
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFR 44


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 123 CRACSNRHGLIRKYGLNICRQC---FRRVCA 206
           CR C  R+   + +G++ICR C   FRR  A
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVA 77


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 123 CRACSNRHGLIRKYGLNICRQC---FRRVCA 206
           CR C  R+   + +G++ICR C   FRR  A
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVA 87


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 203 AYSPEALPADIQAIFTNE 150
           A  P++LPAD +A+FTNE
Sbjct: 301 AVDPDSLPADWKALFTNE 318


>Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical
           protein C40H5.5 protein.
          Length = 409

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 90  HPRRYGQCSRSCRACSNRHGLIRK 161
           H +RY +C R C    NR  ++ K
Sbjct: 163 HAKRYQKCCRKCEIPLNREDMVMK 186


>U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative
           transcription factor TTX-3 protein.
          Length = 409

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 90  HPRRYGQCSRSCRACSNRHGLIRK 161
           H +RY +C R C    NR  ++ K
Sbjct: 163 HAKRYQKCCRKCEIPLNREDMVMK 186


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 111 CSRSCRACSNRHGLIRKYGLNICRQCF 191
           C RSC  C N+  L  +    I R  F
Sbjct: 780 CRRSCNTCVNQQQLAARCATRIVRSAF 806


>AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-like
           protease protein 5 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 255 KNLLNPSLVQLFKSNIMRILSGSTACRYSSHIY 157
           + LLN ++++ +  + MR+     A R SSH++
Sbjct: 47  RTLLNDTIIEFYMCDWMRLEVFDEATRASSHVF 79


>Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical
           protein C47E12.4c protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  WVSRKQTNFTSWVTQISGIH-THVDTGSVPVHAEPAQTDMVSFVN 162
           W + + +   + VTQ+S IH T +D+GS  V     +  + + V+
Sbjct: 34  WATSRTSRPVTNVTQVSAIHTTSMDSGSSTVQLPSPRGSLTTAVS 78


>Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical
           protein C47E12.4b protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  WVSRKQTNFTSWVTQISGIH-THVDTGSVPVHAEPAQTDMVSFVN 162
           W + + +   + VTQ+S IH T +D+GS  V     +  + + V+
Sbjct: 34  WATSRTSRPVTNVTQVSAIHTTSMDSGSSTVQLPSPRGSLTTAVS 78


>Z48544-8|CAA88441.1|  109|Caenorhabditis elegans Hypothetical
           protein ZK945.8 protein.
          Length = 109

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 208 HAHTLRKHCLQIFKP-YLRMRPCLFEQARHEREHC 107
           H   L+ +C  I+ P  +   P  +E   HE EHC
Sbjct: 43  HMGRLKSNCCCIYTPPRVWDDPSTWEPEEHETEHC 77


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
            protein 12 protein.
          Length = 1280

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 267  FAYIKNLLNPSLVQLFKSNIM 205
            F  IKN L P   Q++K NIM
Sbjct: 944  FKTIKNKLKPLFHQIYKQNIM 964


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 57  YIMGHANIWHSHPRRYGQCSRSCRACSNRHG 149
           Y    +N  HS  R  GQ  RS    SN HG
Sbjct: 142 YNTQQSNTGHSRSRPNGQLGRSFSDGSNNHG 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,896
Number of Sequences: 27780
Number of extensions: 138064
Number of successful extensions: 367
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)