Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D23
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   9.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 85  IHTHVDTGSVPVHAEPAQTDMVSFVNM 165
           +H H  TGSV +H     T ++  + +
Sbjct: 194 VHFHDYTGSVVIHVVGGLTGLIGCLTL 220


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
 Frame = -2

Query: 201 ILSGSTA------CRYSSHIYE*DHVC 139
           I+S STA      CRY +H +   H C
Sbjct: 724 IVSASTARSEQFLCRYEAHCFALCHCC 750


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 215 PISCAYSPEALPADIQAIFTN 153
           P SC  SPE     I   +TN
Sbjct: 160 PASCCNSPENNTCSISNSYTN 180


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -3

Query: 98  TWV*MPDICVTHDVKLVCFLETQKREHDQNP 6
           TW+    +C T  +  +C +   +  H ++P
Sbjct: 100 TWIAFDVMCSTASILNLCAISLDRYIHIKDP 130


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 8   DFDRVPSFGSRENKLILHHGSR 73
           D+D  P +   +  +  HHG R
Sbjct: 366 DYDSRPQYQIDKRSMGSHHGQR 387


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 119 TGTLPVSTWV 90
           T T+P+ TW+
Sbjct: 534 TDTVPIHTWI 543


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 167 LEYLQAVLPESMRM 208
           +EYL  V  E++RM
Sbjct: 353 MEYLDKVFKETLRM 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,278
Number of Sequences: 438
Number of extensions: 1978
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)