Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D22
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 154 6e-39
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 153 8e-39
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 0.94
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 1.6
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 3.8
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 3.8
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 25 3.8
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 3.8
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 3.8
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.0
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 25 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.7
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 6.7
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 25 6.7
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 24 8.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 8.8
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 154 bits (373), Expect = 6e-39
Identities = 72/106 (67%), Positives = 84/106 (79%)
Frame = +2
Query: 116 LSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSNEAG 295
++ A+ VS+YS K V+ ++ LPFVF APIR DLV VH +++KN RQPY VS +AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 296 HQTSAESWGTCRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 433
HQTSAESWGT RA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPT
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPT 105
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 153 bits (372), Expect = 8e-39
Identities = 72/106 (67%), Positives = 84/106 (79%)
Frame = +2
Query: 116 LSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSNEAG 295
++ A+ VS+Y+ K V+ +L LPFVF APIR DLV VH +++KN RQPY VS +AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 296 HQTSAESWGTCRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 433
HQTSAESWGT RA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPT
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPT 105
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 0.94
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 153 SEYTDTKVWATDRLISLYQRSYSSKKHYRRW 61
S + +VW TD IS +R+ + ++ RRW
Sbjct: 93 SNNSQQRVWKTDVAISAEKRTETRQRELRRW 123
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 153 SEYTDTKVWATDRLISLYQRSYSSKKHYRRWQRQSAHR 40
SE +D+ WATDR LYQR+ S K ++ H+
Sbjct: 716 SEDSDSP-WATDRGSRLYQRTKGSVKSRESRLKKEKHK 752
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 77 NTIDGGKDNPPIVPNSCSPGIH 12
N DGGKDN ++P P ++
Sbjct: 28 NKRDGGKDNESVIPEKEEPDLN 49
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 87 SSKKHYRRWQRQSAHRAEFMQPGDPLV 7
+S HY+ W R S +RAE+ + D V
Sbjct: 410 ASSGHYQAWIRNSNNRAEWFRFNDAKV 436
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/67 (22%), Positives = 27/67 (40%)
Frame = -1
Query: 255 FDSDTWTSLTRSVLMGALNTNGRGSEAPATTSLFSEYTDTKVWATDRLISLYQRSYSSKK 76
FD S + + + N + PAT + + D V T + IS ++ + K
Sbjct: 13 FDKSHAQSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYK 72
Query: 75 HYRRWQR 55
++ QR
Sbjct: 73 NFTHVQR 79
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 80 KNTIDGGKDNPPIVPNSCS 24
+NT GK NP I PNS S
Sbjct: 265 QNTFFNGKSNPTIDPNSSS 283
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 210 GALNTNGRGSEAPATTSLFSEYTDTKVWATDRLISLYQRSYSSKKHY 70
G LN N S S + D+KVW T RL+ + Y+S+ +
Sbjct: 302 GFLNYNKTFSNLYKVLSETEKTRDSKVWFTFRLVLKTKPLYASESEF 348
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 189 SHL--YSMRPSELTSSMMSTYHCRRTRASPTASAMRPVIKPAPSL 317
SHL S+R S M T+ ++ A PT+S +RP++KP L
Sbjct: 407 SHLGNQSVRERAPEESPM-TFLQKKMAALPTSSPVRPMLKPTLQL 450
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 194 FVFNAPIRTDLVNDVHVSLSKNARQPYCVSNE 289
F NA + + V DV +SLSK +P SN+
Sbjct: 2 FYLNAHLEINKVVDVVMSLSKKFLKPSVASNQ 33
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 414 PPRHMLPNAPCPDLWVPPP 358
PP+ P P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 102 YQRSYSSKKHYRRWQRQSAHRAEFMQPGDPLVL 4
+ + +SKK W QS H F G P+ L
Sbjct: 133 FHSNENSKKIEWTWSNQSLHTLYFRNGGSPIYL 165
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 237 TSLTRSVLMGALNTNGRGSEAPATTSLFSEYTDTKVWAT 121
+S+TRS+ + N G G A L++ ++TK+W T
Sbjct: 246 SSVTRSL---SKNIKGDGDAVRAQLWLWNRQSNTKIWKT 281
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 228 TRSVLMGALNTNGRGSEAPATTSLFSEYTDTKVWATDRLIS 106
TR +++ + NG +AP T+ + K W + L S
Sbjct: 298 TRDIVLSPFHENGTNIKAPIWTTREKDCEQLKEWLDEALHS 338
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 149 NTPTLKSGLLTDSFRFISEVIPPKN 75
N+P+ + L SF+F++ ++P +N
Sbjct: 1952 NSPSTNTELCQASFKFLASILPYEN 1976
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,227
Number of Sequences: 5004
Number of extensions: 32993
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -