Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D22
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 140 6e-34
07_01_0578 + 4295386-4296489,4297394-4297507 138 1e-33
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 34 0.044
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 31 0.41
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 2.9
03_05_0366 - 23505755-23506441 28 3.8
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 28 3.8
03_01_0092 - 731069-731434,731569-733080 28 3.8
12_01_0849 + 7948693-7948996,7949829-7950610 27 5.0
05_06_0216 - 26453029-26454597 27 5.0
04_03_0168 + 12191009-12191322,12191951-12191963 27 6.6
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 27 6.6
12_02_1125 - 26327433-26328239 27 8.7
09_02_0384 - 8294914-8297817 27 8.7
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 27 8.7
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 27 8.7
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 27 8.7
03_02_0769 + 11029923-11030172,11030442-11030569,11030892-110311... 27 8.7
03_01_0247 - 1929000-1929475,1929566-1929614,1929732-1929884 27 8.7
01_05_0417 - 21961780-21962157 27 8.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 140 bits (338), Expect = 6e-34
Identities = 68/106 (64%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Frame = +2
Query: 119 SVAQTLVSVYSEKSEVVA-GASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSNEAG 295
+ A+ LVSV + + ++ A + +P V APIR D+V H LS N RQPY VS AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 296 HQTSAESWGTCRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 433
HQTSAESWGT RAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPT
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT 108
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 138 bits (335), Expect = 1e-33
Identities = 69/102 (67%), Positives = 78/102 (76%), Gaps = 2/102 (1%)
Frame = +2
Query: 134 LVSVYSEKSEVVA--GASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSNEAGHQTS 307
LVSV + + ++ +SL L VF AP+R D+V VH LS N RQPY VS AGHQTS
Sbjct: 8 LVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 67
Query: 308 AESWGTCRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 433
AESWGT RAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPT
Sbjct: 68 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT 109
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 34.3 bits (75), Expect = 0.044
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 414 PPRHMLPNAPCPDLWVPPP 358
PPRH++P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 31.1 bits (67), Expect = 0.41
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 342 RATARQVPQDSALV**PASLLTQ*GWRAFFDSDTWTSLTRSVLMGALN 199
R+ R + AL+ A+ ++ GW S TS RSVL+GALN
Sbjct: 649 RSCCRNIDNPEALIFSSATAISMLGWDNKVRSILSTSFPRSVLLGALN 696
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 191 GGGAKPLRRPHSSPNTPTLKSGLLTDSFRFISEVIPPKNTIDGGKDNPPIVPNSCSP 21
G P P S+P+ P S S S+ PP NT GG +PP P+ SP
Sbjct: 1153 GSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANT--GGGGSPP--PSHGSP 1205
>03_05_0366 - 23505755-23506441
Length = 228
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 194 FVFNAPIRTDLVNDVHVSLSKNAR-QPYCVSNEAGHQTSAESWGTCRAVARIPRVRGGGT 370
++ AP D +V S + R P C S+E + +AES T A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 371 HRSGQGA 391
+ + + A
Sbjct: 168 NDNDEEA 174
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 176 ASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSN--EAGHQT 304
ASL +P F PI DL+ D + + + C+ EAGH T
Sbjct: 295 ASLIVPDDFRCPISLDLMKDPVIVATGQTYERGCIERWLEAGHDT 339
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 411 PRHMLPNAPCPDLWVPPPRTRGIRATARQVP 319
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 171 QGLRSPSHLYSMRPSELTSSMMSTYHCRRTRASPTASAMRPVIKPAP 311
Q L +PS + + L +S S H A+PTA R PAP
Sbjct: 98 QALDAPSRVLPVAAPPLPASSFSFLHAGHPPAAPTALPERRSAVPAP 144
>05_06_0216 - 26453029-26454597
Length = 522
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 40 TMGGLSLPPSIVFFGGITSLIKRNESVSSP 129
T+GG LPP + +GG+T L+ + S+P
Sbjct: 200 TLGGCVLPP-LHEYGGVTKLVLHGMAASTP 228
>04_03_0168 + 12191009-12191322,12191951-12191963
Length = 108
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 219 LTSSMMSTYHCRRTRAS 269
LT+ + ST HCRR RAS
Sbjct: 75 LTAELTSTSHCRRRRAS 91
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 146 YSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVSLSKNARQ 268
Y E + ++G L L F PIRT L N + + + + RQ
Sbjct: 275 YQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQ 315
>12_02_1125 - 26327433-26328239
Length = 268
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +2
Query: 299 QTSAESWGTCRAVARIPRV----RGGGTHRSGQGAFGNMCR 409
Q SA CR A + RV R G R G G G +CR
Sbjct: 128 QASAAGQAGCRRSAFLGRVGCAARPDGARRPGDGGAGGLCR 168
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 128 QTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVSLSK 256
+ LV +Y S V PLP + PIR LV +H+++ K
Sbjct: 114 EELVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -2
Query: 191 GGGAKPLRRPHSSPNTPTLKSGLLTDSFRFISEVIPPKNTIDGGKDNPPIVPNSCSP 21
GGGA + P SP+ + S + + +I P+ + G+ +P + +S P
Sbjct: 62 GGGAGRNKLPPKSPSISSFHSSPTSSRLAGLGGLIDPRRILSPGRVSPIDLDDSAPP 118
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 267 WRAFFDSDTWTSLTRSVLMGALNTNGRGSEAPATTSLFSEYTDTKVWATDRLISL 103
WR+ F +D ++T+ GA +G+G +A D K WA +SL
Sbjct: 511 WRSLFPNDLAIAITKDRQNGAFKPHGKGRKAG------KRVYDIKRWAKQAPLSL 559
>04_03_0496 +
16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 191 GGGAKPLRRPHSS--PNTPTLKSGLLTDSFRFISEVIPPKNTIDGG 60
GGGA P RRP + P L LL ++ + V KN + G
Sbjct: 32 GGGAGPSRRPPPTHPPRLKLLAHSLLATAYGVLGAVPSQKNVLRRG 77
>03_02_0769 +
11029923-11030172,11030442-11030569,11030892-11031137,
11031302-11031557,11031665-11031888
Length = 367
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 164 VVAGASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSNEAGHQ 301
VVAG +P FVF + N+ VSLSK P + + GHQ
Sbjct: 24 VVAGGGMPATFVFGDSLVDAGNNNYLVSLSKANYPPNGIDFD-GHQ 68
>03_01_0247 - 1929000-1929475,1929566-1929614,1929732-1929884
Length = 225
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 99 QRSYSSKKHYRRWQRQSAHRAEFMQ 25
++ ++SKKH RW + ++RA + Q
Sbjct: 188 KKLFTSKKHVARWYEEISNRASWKQ 212
>01_05_0417 - 21961780-21962157
Length = 125
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 184 PPPICIQCAHQN*PRQ*CP 240
PPP C CAHQ P CP
Sbjct: 6 PPPPCAACAHQGRPS--CP 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,270
Number of Sequences: 37544
Number of extensions: 284392
Number of successful extensions: 1231
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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