Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D22
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   133   6e-32
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    31   0.36 
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    31   0.36 
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical...    29   1.9  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   2.5  
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    27   4.4  
U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    27   5.9  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    27   5.9  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    27   5.9  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    27   5.9  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   7.8  
U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    27   7.8  
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    27   7.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  133 bits (321), Expect = 6e-32
 Identities = 65/102 (63%), Positives = 76/102 (74%)
 Frame = +2

Query: 125 AQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSNEAGHQT 304
           A+ LV+VY EK E    + + LP VF  PIR DLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 305 SAESWGTCRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 430
           SAESWGT RAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAP 103


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 210 GALNTNGRGSEAPATTSLFSEYT-DTKVWATDRLISLYQ 97
           G LN NGR S A   T  F++YT  T V  TD   SL Q
Sbjct: 9   GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 210 GALNTNGRGSEAPATTSLFSEYT-DTKVWATDRLISLYQ 97
           G LN NGR S A   T  F++YT  T V  TD   SL Q
Sbjct: 9   GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47


>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 243 TWTSLTRSVLMGALNTNGRGSEAPATTSLFSEY 145
           TW++    V M  LN+NG  +E P  TSL S +
Sbjct: 270 TWSNHPAGVKMFDLNSNGNSAEFPIETSLISAF 302


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -1

Query: 267  WRAFFDSDT-WTSLTRSVLMGALNTNGRGSEAPATTSLFSEYTDTKVWATD--RLISLYQ 97
            ++ FFD +  W S+     +G++N  G G+    +  LFS      +  TD  +L S+Y 
Sbjct: 2319 YQGFFDHNLEWVSIENIQFVGSMNPIGDGAAVSISNRLFSLLRCVSLNTTDSSQLTSIY- 2377

Query: 96   RSY 88
            R+Y
Sbjct: 2378 RTY 2380


>AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical
           protein Y39B6A.16 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 153 SEYTDTKVWATDRLISLYQRSYSSKKHYRRWQRQSAH 43
           S + + KV A DRL   Y    + K+HY++   ++ H
Sbjct: 100 STFLERKVAAFDRLRDAYSEEKTKKEHYKKQLEEAYH 136


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +2

Query: 110 MSLSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVSLSKNARQPYCVSN 286
           MS++V    +S       VV+     + F+++ P  + ++ D H+   + A    CV++
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVAS 240


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 119 SVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTD 223
           S  +T+  +Y+EKSEV +   L L  V   P   D
Sbjct: 217 SAPETIRGIYTEKSEVYSFGHLMLVLVIGGPTEDD 251


>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
           protein 2, isoform b protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 104 SEMSLSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVS 247
           SE+ +S++  + S  S+ SE  A  SLP      AP+ + L++D   S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 104 SEMSLSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVS 247
           SE+ +S++  + S  S+ SE  A  SLP      AP+ + L++D   S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
           protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 104 SEMSLSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVS 247
           SE+ +S++  + S  S+ SE  A  SLP      AP+ + L++D   S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 104 SEMSLSVAQTLVSVYSEKSEVVAGASLPLPFVFNAPIRTDLVNDVHVS 247
           SE+ +S++  + S  S+ SE  A  SLP      AP+ + L++D   S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 216 LMGALNTNGRGSEAPATTSLFSEYTDTKVWATDRLISLYQR 94
           ++G   TNG+G  A  +T    E TD++V  ++++ + Y +
Sbjct: 79  VIGVGFTNGQGEPADKSTRASRESTDSEVSESEQISNAYNK 119


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 414 PPRHMLPNAPCPDLWVPPPRTRG 346
           PP    P AP P +++PPP   G
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPG 182


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 414 PPRHMLPNAPCPDLWVPPPRTRG 346
           PP    P AP P +++PPP   G
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPG 182


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 344 IPRVRGGGTHRSGQGAFGNMCRGG 415
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 241 VDIIDEVSSDGRIEYKWEGERS 176
           VD++D VS DG   Y++ G R+
Sbjct: 152 VDLVDRVSHDGNWTYEYPGTRT 173


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 241 VDIIDEVSSDGRIEYKWEGERS 176
           VD++D VS DG   Y++ G R+
Sbjct: 180 VDLVDRVSHDGNWTYEYPGTRT 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,873
Number of Sequences: 27780
Number of extensions: 199825
Number of successful extensions: 717
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)