Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D21
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual     103   2e-23
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    55   7e-09
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    48   1e-06
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    32   0.042
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   1.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   4.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.4  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.4  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score =  103 bits (247), Expect = 2e-23
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
 Frame = +1

Query: 31  RIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSPRCHGCGDPITDR 210
           RI++A  KK HP+ F C+TC + ++   F+      +C   + +  SPRC  C  PI D+
Sbjct: 269 RIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPRCKHCKTPIEDQ 328

Query: 211 VIQALGVAWHANH-FVXXXXXXXXXXXXFMEQAGRPYCSACYADKFAARCKGCLKPIVDK 387
            +      +H NH F              + +    +C  CY +K+A +CK C KPI+  
Sbjct: 329 AVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKCKKCRKPILGI 388

Query: 388 AVIALDAKWHRDCFTCMKCRNPVTDSTFSVMDNQPLC 498
           +V   D ++H  C+TC  C   + D  + +++N P+C
Sbjct: 389 SVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPIC 425


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 42/157 (26%), Positives = 59/157 (37%), Gaps = 10/157 (6%)
 Frame = +1

Query: 10  CNTVIQCRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVH-----CVPCFAQHHSP 174
           C  VI  + V AL   +H E F C+ C   +    F   +  ++     C   + +    
Sbjct: 119 CGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRRLDL 178

Query: 175 RCHGCGDPITDRVIQALGVAWHANHFVXXXXXXXXX-XXXFMEQAGRPYCSACYADKFAA 351
            C  CG  +    I AL   +H  HF              + E  G+ YC   Y+  FAA
Sbjct: 179 LCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTLFAA 238

Query: 352 RCKGCLKPIVDKAV----IALDAKWHRDCFTCMKCRN 450
           RC GC  PI+ + V      +   WH  C    K  N
Sbjct: 239 RCCGCDGPILRQFVEVYRNGVSQNWHVPCHMIYKFWN 275



 Score = 34.7 bits (76), Expect = 0.008
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
 Frame = +1

Query: 178 CHGCGDPITDRVIQALGVAWHANHFVXXXXXXXXXXXXF-----MEQAGRPYCSACYADK 342
           C  CG  I+ + ++ALG  +H   F             F           P C   Y  +
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRR 175

Query: 343 FAARCKGCLKPIVDKAVIALDAKWHRDCFTCMKC 444
               C  C   +    + AL+ K+H + FTC  C
Sbjct: 176 LDLLCASCGMALRGYYITALNKKFHIEHFTCSLC 209


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = +1

Query: 307 GRPYCSACYADKFAARCKGCLKPIVDKAVIALDAKWHRDCFTCMKCRNPVTDSTFSVMDN 486
           GRP CS+C     A  C  C   I D A+++    +HR+CF C  CR  + DS F   DN
Sbjct: 67  GRPVCSSC-----AHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFK-RDN 120

Query: 487 QPL 495
           + +
Sbjct: 121 RTI 123



 Score = 33.5 bits (73), Expect = 0.018
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 58  WHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSPR 177
           +H E F C+ CRK I  + F + N  + C  C    H  R
Sbjct: 97  YHRECFRCHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSR 136



 Score = 31.5 bits (68), Expect = 0.074
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +1

Query: 412 WHRDCFTCMKCRNPVTDS---TFSVMDNQPLC 498
           WH+DCF C KC   +  S        D +P+C
Sbjct: 40  WHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVC 71


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 32.3 bits (70), Expect = 0.042
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
 Frame = +1

Query: 52  KKWHPEHFTCNTCRKPIDGAK--FHQHN-NGVHCVPCFAQHHSPRCHGCGDPITDRVIQA 222
           K WH + F C  C K +D +   F Q +   + C  C        C+GC  PI +    A
Sbjct: 42  KCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLCV-----DICNGCSTPICE--FNA 94

Query: 223 LGVAWHANHFVXXXXXXXXXXXXFMEQAGRPYCSAC 330
           +  +  ANH              F +  G+ YC  C
Sbjct: 95  VSNS-QANHPCCSNCRAFINSNAFGKFKGQHYCLPC 129



 Score = 29.5 bits (63), Expect = 0.30
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 355 CKGCLKPIVDKAVIALDAK-WHRDCFTCMKCRNPVTDST 468
           C  C + +   + +    K WH DCF C+ C   +  S+
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSS 62


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 293 LWNRLDVRIARLATLTNSQPVARDA 367
           LWN L VRI  + TLT +Q +  D+
Sbjct: 275 LWNGLGVRIVMIGTLTGAQWLIYDS 299


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 121 QHNNGVHCVPCFAQHHSPRCHGCGDPITDRVIQALGVAWHANHFV 255
           Q+ + +   PC + H+ P C  C D + ++ I      W A+  V
Sbjct: 382 QYGSKIEDTPC-SLHNVPGCFSCFDRLGEKNITETNSNWFAHRLV 425


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -1

Query: 399  SDYSFVDDGFQASLATGCEFVSVASRAIRTSSLFHKSTASELLLATTAYEVVSV--PRHA 226
            S  S VD    AS ATG    S+A+ ++  SS    +TAS    +T++    SV     +
Sbjct: 957  SSSSEVDPSTAAS-ATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTS 1015

Query: 225  QCLDHAVSDGITAAVA 178
                 +V+D  T++VA
Sbjct: 1016 SVATASVTDSSTSSVA 1031



 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 366  ASLATGCEFVSVASRAIRTSSLFHKSTASELLLATTAYEVVSV--PRHAQCLDHAVSDGI 193
            A+  TG    SVA+ ++  SS    +TAS    +T++  V SV     +     + +D  
Sbjct: 1006 AASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSS 1065

Query: 192  TAAVAPRAV 166
            T++VA  ++
Sbjct: 1066 TSSVATASI 1074


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 230 WRGTLTTSYAVVARRSSEAVDLWNRLDVRIARLATLTNSQPVARD 364
           +  TLTT+ ++ A + +      +R DVR+  +  LT+ Q +  D
Sbjct: 399 YNSTLTTTRSIPANKPTFFWASCDRKDVRVGDIIRLTSDQTLPAD 443


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 49   NKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSP 174
            +K +HP+ ++ +TCRK I   +       +       +H+ P
Sbjct: 2548 HKVYHPKEWSLSTCRKLIAEKQMEDLETRLKVYDLVCRHYRP 2589


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 52  KKWHPEHFTCNTCRKPI 102
           +KW   H TC  CRK +
Sbjct: 137 QKWLENHCTCPLCRKEV 153


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 291 STASELLLATTAYEVVSVPRHAQCLDHAVSDGI 193
           +T  +   ATT   V S    A    HAV+DGI
Sbjct: 254 NTTHDQAAATTTAAVASASTTATAESHAVADGI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,839
Number of Sequences: 5004
Number of extensions: 42205
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)