Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D21
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +3

Query: 15  HRNSMQNRDGVKQ-EVAPGTLHMQHVPQAHRWCQVPPAQQRCSLR 146
           H + M    G +    +PG  HM H P  +     P     C L+
Sbjct: 100 HGSGMDGMGGYRSASPSPGMGHMGHTPTPNGHPSTPIVYASCKLQ 144


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 379 RWVSGIPCNGLRICQRSKPSNTDVQPVP 296
           +W  GIP     + + SK  +  ++P P
Sbjct: 205 KWKDGIPVTLTTVPKHSKTKSPKLRPYP 232


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 387 FVDDGFQASLATGCEFVSVASRAIRTSSL 301
           F+D+     L T C  +S A  A++++ L
Sbjct: 91  FLDENGVNKLITECSAISDADLAVKSAKL 119


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 66  GTLHMQHVPQAHRW 107
           G + M HVP  H W
Sbjct: 94  GGVEMLHVPSDHIW 107


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 137 TPLLCWWNLAPSMGLRHVLHVKC 69
           TPL+   N+  S G++  ++ KC
Sbjct: 46  TPLIKLNNIPKSYGIKCEIYAKC 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,407
Number of Sequences: 438
Number of extensions: 3051
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)