Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D20
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    30   0.15 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   2.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   4.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   5.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   7.2  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   7.2  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 24/95 (25%), Positives = 42/95 (44%)
 Frame = +3

Query: 9   ENLKIEMDNITDATENHAECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIKEQNGSAYK 188
           E  K+  +++ +AT +  E    Q    +Q    L+ S +   +DH    I E+NG ++ 
Sbjct: 87  EGQKLITESLINATTDQNESQASQA---KQSSAQLSDSESGYPLDHEEMRISEENGPSHI 143

Query: 189 IKTNINFEDIPNKIILGKTTNGTRLVAKVVKSMKP 293
              N  F DI N       T+   + +K+  S+ P
Sbjct: 144 ENLNF-FSDIDN----FSKTSAEEIASKLFSSVSP 173


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 30  DNITDATENHAECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIKEQNGSAYKIKTNINF 209
           DN  +  E+  E  +  +++ Q + VN    S + ++     V+K++      + TN+NF
Sbjct: 247 DNQEEEEESDDEGPDVSKLLHQAN-VNKKTKSREAALLRARAVVKKKERGKQNVPTNVNF 305


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = -2

Query: 343  LSHLIFGFGIIFSEIVIGFIDFTTFATNLVPFVVLPKIILLGISSKLMFVL 191
            L+H +  FG++F+   + F++  +F+  ++  +V+  I  L     ++F+L
Sbjct: 1614 LAHAVSVFGLVFTFEALWFLEAWSFSKTVLGCIVIFAIHRLVFKLVVVFLL 1664


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 15   LKIEMDNITDATENHAECCE 74
            +K+E D + D  EN A+C E
Sbjct: 1820 MKLEPDKVFDVEENIADCIE 1839


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 127  FELAFRLTLSC*NTISCFSQ 68
            + L +RLTL   NTI C SQ
Sbjct: 1667 YSLFYRLTLRIENTIYCVSQ 1686


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 63  ECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIKEQNGSAYKIKTNINFEDIPNKIILGK 242
           E   K    F   + +L   S+  S     +V+K  +   Y     I   +IP+    GK
Sbjct: 3   EQSSKSHPSFMSTEYSLPVFSSQYSDIENKDVLKSNSWDPYAANAPIALSEIPSSSKSGK 62

Query: 243 TTNGTR 260
            TNG++
Sbjct: 63  -TNGSK 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,205
Number of Sequences: 5004
Number of extensions: 27583
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)