Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D20
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0246 - 8243584-8243696,8243848-8244415,8244500-8244685,824... 28 3.0
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 27 4.0
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 27 5.3
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929... 27 7.0
10_08_0565 + 18827298-18827361,18827473-18827784,18827886-188287... 27 7.0
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 7.0
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 27 7.0
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 26 9.2
>02_02_0246 -
8243584-8243696,8243848-8244415,8244500-8244685,
8244772-8244804,8244901-8244999,8245091-8245330,
8246130-8246447,8246589-8246646,8246788-8246846,
8246888-8246960,8247004-8247219,8247326-8247495
Length = 710
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 24 EMDNITDATENHAECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIKE--QNGSAYKIKT 197
E ++TD ENH E EI + ++ + +S D S ++ + Q GS +K +
Sbjct: 562 ENSSMTDKEENHDEVHTNCEIKKRTEEHCIQINSEDSSSTYSQRTMNATVQTGSPHKTEE 621
Query: 198 NI 203
NI
Sbjct: 622 NI 623
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 27.5 bits (58), Expect = 4.0
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Frame = +3
Query: 9 ENLKIEMDNITDATENHAECCEKQEIVFQQDKVNLN-----ASSNDVSMDHTVEVIKEQN 173
+N++ +MD+ T+ + +EC + DKV N ++ ND + + + +
Sbjct: 311 DNIEEDMDDDTEHSSGGSECDNNIKTSVSDDKVKSNNSGTASNGNDQGLQPPKKAARTGH 370
Query: 174 GSAYKIKTNINFEDI----PNKIILGKTTNG-TRLVAKVVKSMKPMTI 302
G+A K +++ E+I ++ ++ K N T L +K+ K K +I
Sbjct: 371 GAARK---DLSAEEIDYCSDDETLIEKLENSKTDLQSKITKEAKENSI 415
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 117 ASSNDVSMDHTVEVIKEQNGSAYKIKTNINFEDIPNK 227
A S S+ V ++++ A K K ++NFE IP K
Sbjct: 119 AGSEGRSVRREVADVQQKTKEASKTKPSVNFEKIPKK 155
>12_01_1113 -
11888691-11888900,11891794-11892243,11892274-11892950,
11893396-11893957,11894121-11894207
Length = 661
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 74 KTRNCISTR*S*SECEFKRCFYGSHSGSHK 163
K C++T S S+C F+ CF + HK
Sbjct: 180 KCSKCLATGHSRSDCHFRVCFKACFAYGHK 209
>10_08_0565 +
18827298-18827361,18827473-18827784,18827886-18828758,
18828870-18828946,18829090-18829119,18829654-18829731
Length = 477
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 86 NFLFFTAFCMILSSISYIIHFYLEI 12
NFLFF FC+ ++Y H Y E+
Sbjct: 442 NFLFFDVFCVY--EVAYKCHEYFEV 464
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 113 QINFILLKYNFLFFTAFCMILSSISYIIHFY 21
QI+F + NF +FC +LSS Y++ +
Sbjct: 1666 QIHFKVFMDNFELTRSFCCLLSSFFYVLRVH 1696
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 101 ILLKYNFLFFTAFCMILSSISYIIHFYL 18
+LLK F TA ++LS +S ++H +L
Sbjct: 1 MLLKSKFKLATAIGIVLSMLSLLVHLFL 28
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 162 KEQNGSAYKIKTNINFEDIPNKIILGKTTNG 254
K +NG+ K+N+ F + N G T NG
Sbjct: 592 KVENGTTESPKSNMMFNSVDNSSAHGSTNNG 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,849
Number of Sequences: 37544
Number of extensions: 138123
Number of successful extensions: 397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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