Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D20
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-14|AAK29720.2| 264|Caenorhabditis elegans F-box a prot... 30 0.50
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z35663-12|CAA84736.2| 718|Caenorhabditis elegans Hypothetical p... 28 2.0
AF024503-5|AAG24096.1| 330|Caenorhabditis elegans Serpentine re... 28 2.0
U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 28 2.7
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical ... 27 3.6
Z71259-2|CAA95790.1| 336|Caenorhabditis elegans Hypothetical pr... 27 4.7
AF039051-7|AAB94267.2| 304|Caenorhabditis elegans Serpentine re... 27 4.7
AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine r... 27 4.7
Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical pr... 27 6.2
U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z75955-3|CAB00114.1| 461|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 26 8.2
AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical... 26 8.2
>AC006714-14|AAK29720.2| 264|Caenorhabditis elegans F-box a protein
protein 77 protein.
Length = 264
Score = 30.3 bits (65), Expect = 0.50
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 33 NITDATENHAECCEKQEIVFQQDK-VNLNASSNDVSMDHTVEVI 161
N A +N CEK EIV + D VNL+ +D S +H ++VI
Sbjct: 33 NFRAAVDNVGIDCEKVEIVLKPDNIVNLSVDGDDAS-NHDLDVI 75
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 155 FHCVIHRNIV*TRIQINFILLKYNFLFFTAFCMILSSISYIIHFY 21
FH ++ R + + I K F FFTAF ++L S+ + Y
Sbjct: 180 FHFLMDRPVCAAFCTVRDIPKKLQFYFFTAFLIMLGSVVFFSSLY 224
>Z35663-12|CAA84736.2| 718|Caenorhabditis elegans Hypothetical
protein T04A8.15 protein.
Length = 718
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 48 TENHAECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIK 164
++ H C+ + + + LN S ++ ++HT EV+K
Sbjct: 252 SDGHRVKCQTMILKHRTSLIRLNPKSENIQVEHTKEVVK 290
>AF024503-5|AAG24096.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein246 protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 343 LSHLIFGFGIIFSEIVIGFIDFTTFATNLVPFVVLPKIILLGISSKLMFVLI 188
+ + F +I IVI IDFT + L+ ++L L G+ S L+ +++
Sbjct: 243 IQFMFFLLLVIIPIIVILIIDFTAYHNQLLNNIILFPFYLSGVWSTLIMLIV 294
>U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical
protein C41G11.4b protein.
Length = 514
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 104 FILLKYNFLFFTAFCMILSSISYIIHFYLEIF 9
FI+L N +F+ +C++ + S II YL F
Sbjct: 466 FIMLSLNLVFWAPYCILAITSSVIISQYLTNF 497
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 104 FILLKYNFLFFTAFCMILSSISYIIHFYLEIF 9
FI+L N +F+ +C++ + S II YL F
Sbjct: 445 FIMLSLNLVFWAPYCILAITSSVIISQYLTNF 476
>AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical
protein ZK6.6 protein.
Length = 324
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -2
Query: 331 IFGFGIIFSEIVIGFIDFTTFATNLVPFVVLPKIILLGISSKLMFVLIL*ALPFCSFMT 155
I+GFG+ E ++G I +T + + F + P +++ + + + + L + PF + +T
Sbjct: 139 IYGFGVGVGETIMGII-ISTLSKRIKDFGLKPTMLIGSVLTTVFCFVALLSTPFDATVT 196
>Z71259-2|CAA95790.1| 336|Caenorhabditis elegans Hypothetical
protein F13G3.2 protein.
Length = 336
Score = 27.1 bits (57), Expect = 4.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -1
Query: 221 RYIFKINVCFDFISTAILFFYDFHCVIHRNIV*TRIQINFILLKYNFLFFTAFCMILSSI 42
R++ IN+ F F + LFF C++ I+ R N + FL+ TAFC I + +
Sbjct: 10 RFVPIINIYFHFYLVSGLFF---QCILMILII--RKSPNSLNDLKLFLYNTAFCQIANIL 64
Query: 41 S-YIIHF 24
S Y I +
Sbjct: 65 SAYFIQY 71
>AF039051-7|AAB94267.2| 304|Caenorhabditis elegans Serpentine
receptor, class x protein8 protein.
Length = 304
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 295 IGFIDFTTFATNLVP-FVVLPKIILLGISSK 206
IG FT +T + F++LP I++LG S+K
Sbjct: 7 IGMSSFTLTSTAIFTNFLILPPILILGFSNK 37
>AC006675-10|AAK84551.2| 280|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 57 protein.
Length = 280
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/55 (16%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -2
Query: 343 LSHLIFGFGIIFSEI--VIGFIDFTTFATNLVPFVVLPKIILLGISSKLMFVLIL 185
++ + F F ++ +++ ++G + T F NL+ +++ +++ I + ++F + +
Sbjct: 50 VAEIFFHFVVVLNKLYSIVGLVSTTMFVKNLIFYLIWLSLVMGTIKTTIVFFITI 104
>Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical
protein W07G4.2 protein.
Length = 434
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 15 LKIEMDNITDATENHAECCEKQEIVFQQDKVNLNASSND 131
LK DN+T + H CC + K + A +N+
Sbjct: 353 LKFSCDNLTIVEKQHRTCCLAHGWCYVYKKATMEACNNE 391
>U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical
protein F18F11.3 protein.
Length = 427
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 218 YIFKINVCFDFISTAILFF-YDFHCVIHRNIV*TRIQINFILLKYNFLFF 72
Y F + + ++++ILFF + V H ++ T++ IN++ LK+ L F
Sbjct: 40 YCFSVALSCTSLNSSILFFIFLLLWVNHNKVIHTQV-INWMPLKFKILIF 88
>Z75955-3|CAB00114.1| 461|Caenorhabditis elegans Hypothetical
protein R07B7.5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 8.2
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 39 TDATENHAECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIKEQNGSAYKIKTNINFEDI 218
++ E + K V+ +VN S ND++M + E+ N S+YK++ F+ I
Sbjct: 339 SETLEEYGNDIAKAVKVYSDGRVNDAHSINDLAMYNYEELKDLVNKSSYKLRK--KFDTI 396
Query: 219 PNKI 230
N I
Sbjct: 397 MNSI 400
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
protein F47A4.2 protein.
Length = 3498
Score = 26.2 bits (55), Expect = 8.2
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +3
Query: 3 TGENLKIEMDNITDATENHAECCEKQEIVFQQDKV----NLNASSND-VSMDHTVEVIKE 167
TG+ + + + T T AE E IV DK+ N +++SND S D TV + +
Sbjct: 611 TGKENEDDTSSKTAKTSTSAEKSEAPSIVDSNDKIDKEPNASSTSNDETSKDDTVPMESD 670
Query: 168 QNGSAYKIK--TNINFED 215
+ K K T I E+
Sbjct: 671 PPAATEKPKESTEITTEE 688
>AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical
protein Y102A5C.33 protein.
Length = 326
Score = 26.2 bits (55), Expect = 8.2
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 242 FTQDYFIRYIFKINVCF---DFISTAILFFYDFHCVIH---RNIV*TRIQINFILLKYNF 81
++Q+Y Y+ K+NV F DFI AI +F +F + NI + + +I++
Sbjct: 141 YSQNYISNYVRKLNVFFVLKDFICFAI-YFLNFGKQLGDEIMNITLSVYLVLYIIVNVII 199
Query: 80 LFFTAFCMILSSISYIIHFYL 18
F T F I I H +L
Sbjct: 200 CFLTPFIYIPIIIGMKKHRHL 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,076,061
Number of Sequences: 27780
Number of extensions: 154217
Number of successful extensions: 531
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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