Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D19
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   0.57 
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    28   0.57 
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    27   0.99 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   0.99 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.3  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   5.3  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   9.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   9.3  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = -3

Query: 205 HPGVPVPAVGTAASAERVSSELDHFLSLYLSMSCWAEEENSPACVCMRSVRSSRWESFSP 26
           H  VP+P   T      +  E +  L   L     A     PA VC  S+R   W+S  P
Sbjct: 519 HTPVPIPTTATQ-DVVTIRPEFNSQLLNNLRQIINARRRPRPAAVCQVSLREDYWKSPHP 577


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 21  ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLK--YKDKK 134
           ERGE+L  L+D+T+ +   A  F   A ++  K  +KD +
Sbjct: 55  ERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMR 94


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 402 ILTRIGLCDVVQFGIQRKR-EEELYLHGKYRYSTFSIEVTSE*SHSEVHNSTV 247
           IL + G+ DV   G+      +E  LH ++ Y+T+ I    + S +E HN  +
Sbjct: 144 ILDKKGITDVFIAGVATDICVKETALHARHWYNTYIISEAVKGSSTESHNQAI 196


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 157 APRSLPFRQPAP-GHRGAGPSPGGSDLLFFIDSTI 258
           +P  L +R+    G   + PSP GS+ +F+ DST+
Sbjct: 852 SPSYLTYRESDGFGIASSNPSPAGSEGIFYYDSTL 886


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 87   FSSSAQQLMLKYKDKKWSSSELTRSALAAVPTAGTGTP 200
            FS + + L  KYK   +++ ++T +   A+P A +  P
Sbjct: 1407 FSKAVEALSCKYKQSGFTNGKITNTNGHAIPIAASKNP 1444


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -3

Query: 220  QEMDPHPGVPVPAVGTAASAERVSSELDHFLSLYLSMSCWAEEENSPACVCMRSVRSSRW 41
            Q +D  P V +P    +++    S EL   L++  S S      +     C  S  SSRW
Sbjct: 1877 QVVDKLPTVEIPNESRSSAFIFPSYELAEGLTMMESSSFMDSIISFIDSTCFPS--SSRW 1934

Query: 40   ESFSPRSTA 14
              ++P STA
Sbjct: 1935 FQYAPSSTA 1943


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 309 NIGIYRVGTTLPLSSSEYRTELHRIIRY 392
           ++ + + G T+ L +S  + ++HR IRY
Sbjct: 68  DVSLEKYGNTILLPASTSKLDVHRTIRY 95


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 411 LTGAVACTWNRL 446
           LTGA AC+WN L
Sbjct: 53  LTGAEACSWNGL 64


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 290 LHQNRAT--PRSTIVLSMKNNRSLPPGDGPAP 201
           +H+N +T   RS    SM N    PP   P+P
Sbjct: 150 IHKNASTGVKRSFFSSSMSNGAMSPPSHSPSP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,986
Number of Sequences: 5004
Number of extensions: 35977
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)