Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D19
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 35 0.026
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 32 0.18
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 30 0.74
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 30 0.74
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 29 1.3
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 29 1.7
07_01_0160 + 1126674-1126937,1128442-1129998 29 1.7
10_08_0950 + 21764902-21765912 29 2.3
11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750 28 3.0
09_06_0162 + 21290999-21291331 28 3.0
01_06_0509 - 29921224-29924589 28 3.0
05_07_0188 - 28269657-28270034,28270113-28270253,28270334-282705... 27 6.9
02_05_0686 - 30900748-30902167,30903442-30904742 27 6.9
11_06_0732 - 26740718-26741704,26741876-26742478 27 9.1
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 27 9.1
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 27 9.1
07_03_1296 + 25583195-25584385 27 9.1
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 27 9.1
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 27 9.1
04_04_1001 - 30020380-30021045,30021127-30021210,30022091-300221... 27 9.1
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 27 9.1
03_05_0057 + 20350971-20351405 27 9.1
>07_03_1781 + 29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 35.1 bits (77), Expect = 0.026
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
++R EKL + RT + + A F+S AQ+L ++KKW
Sbjct: 1017 MQRQEKLERISQRTAELESGAENFASLAQELAKSMENKKW 1056
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 32.3 bits (70), Expect = 0.18
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 24 RGEKLSHLEDRTERMHTQAGEFSSSAQQLMLK 119
RGEKLS L+D+T + +QA EF ++ K
Sbjct: 206 RGEKLSELQDKTSDLQSQAQEFKKKGVKIRRK 237
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 30.3 bits (65), Expect = 0.74
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 50 GSY--RAHAHAGRRVLLLRPAAHAQVQGQEVVQL*TDTLRARCRSDSRHRD 196
GSY R HA V L P+A +Q++ QE+ + D L R R+ +
Sbjct: 654 GSYYPRTSEHASSSVSLREPSASSQLKSQEITEALNDELSQRQHKPRRYSE 704
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQ 107
++RGEK+ L D+TE + +QA +F + Q
Sbjct: 153 LDRGEKIELLVDKTENLRSQAQDFRQAGTQ 182
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLK 119
++RGEK+ L D+TE + +QA +F + ++ K
Sbjct: 156 LDRGEKIELLVDKTEDLRSQAQDFRKAGTKIRRK 189
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 399 LTRIGLCDVVQFGIQRKREEELYLHGKYRYSTFSIEVTSE 280
L RIG+ D +Q RK +++ ++HG Y + V +E
Sbjct: 249 LERIGVADFLQEVTSRKDQKQYWIHGDDTYRYIPVTVIAE 288
>07_01_0160 + 1126674-1126937,1128442-1129998
Length = 606
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 269 PRSTIVLSMKNNRSLPPGDGPAPRCPGAGCRNG 171
P S + ++R++ PG P PR PG G R G
Sbjct: 32 PGSGCAAARLHHRAVRPGGRPPPRAPGRGGRAG 64
>10_08_0950 + 21764902-21765912
Length = 336
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Frame = -3
Query: 202 PGVPVPAVGTAASAERVSSELDHFLSLYLSMSCWAEEENSPACVCMR---------SVRS 50
P + PA AA+A VSS L CW EE R ++R+
Sbjct: 20 PPLAAPAAAAAAAAAAVSSGGAGGSGRRLPPPCWTHEETLALIEAYRDRWEGLRKGNLRA 79
Query: 49 SRWESFSPRSTARC 8
S W+ + TARC
Sbjct: 80 SDWDDVAGAVTARC 93
>11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750
Length = 422
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 156 RSALAAVPTAGTGTPGCGSISWWE 227
++A+AA AG G PG G WW+
Sbjct: 18 KAAMAAAAAAG-GAPGAGGGDWWD 40
>09_06_0162 + 21290999-21291331
Length = 110
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 196 VPVPAVGTAASAE--RVSSELDHFLSLYLSMSCWAEEENSPACVCMRSVRSSRW 41
VP+ +GTA +E R+S E F S + + E S C C R + SRW
Sbjct: 57 VPLTYLGTAVFSELLRMSQEEFGFTSDGRIVLPFDAERWSMPCACSREIPQSRW 110
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -2
Query: 218 GDGPAPRCPGAGCRNG 171
GDG A R PGAGCRNG
Sbjct: 50 GDG-ACRFPGAGCRNG 64
>05_07_0188 -
28269657-28270034,28270113-28270253,28270334-28270570,
28270733-28271179,28273978-28274274
Length = 499
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 239 NNRSLPPGDGPAPRCPGAGCRNG 171
++R++ PG P PR PG G R G
Sbjct: 53 HHRAVRPGGRPPPRAPGHGERAG 75
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 160 PRSLPFRQPAPGHRGAGPSP 219
PRS P PAP R A PSP
Sbjct: 267 PRSSPSPAPAPAARPASPSP 286
>11_06_0732 - 26740718-26741704,26741876-26742478
Length = 529
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 381 CDVVQFGIQRKREEELYLHGKYRYSTFSIEV 289
CD+ IQ K + + + HG Y F IE+
Sbjct: 320 CDIDLVSIQEKGDAKKFRHGNPEYLDFLIEI 350
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 381 CDVVQFGIQRKREEELYLHGKYRYSTFSIEV 289
CD+ IQ K + + + HG Y F IE+
Sbjct: 320 CDIDLVSIQEKGDAKKFRHGNPEYLDFLIEI 350
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 381 CDVVQFGIQRKREEELYLHGKYRYSTFSIEV 289
CD+ IQ K + + + HG Y F IE+
Sbjct: 320 CDIDLVSIQEKGDAKKFRHGNPEYLDFLIEI 350
>07_03_1296 + 25583195-25584385
Length = 396
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -2
Query: 212 GPAPRCPGAGCR 177
G A RCPGAGCR
Sbjct: 170 GRALRCPGAGCR 181
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 381 CDVVQFGIQRKREEELYLHGKYRYSTFSIEV 289
CD+ IQ K + + + HG Y F IE+
Sbjct: 320 CDIDLVSIQEKGDAKKFRHGNPEYLDFLIEI 350
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 381 CDVVQFGIQRKREEELYLHGKYRYSTFSIEV 289
CD+ IQ K + + + HG Y F IE+
Sbjct: 272 CDIDLVSIQEKGDAKKFRHGNPEYLDFLIEI 302
>04_04_1001 -
30020380-30021045,30021127-30021210,30022091-30022166,
30022241-30022353,30023678-30023683
Length = 314
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +3
Query: 93 SSAQQLMLKYKDKKWSSSELTRSALAA----VPTAGT 191
+SA +K D+K+ SE TRSALAA V TAG+
Sbjct: 161 TSAVNDKVKEMDQKYQVSEKTRSALAAAEQSVSTAGS 197
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 381 CDVVQFGIQRKREEELYLHGKYRYSTFSIEV 289
CD+ IQ K + + + HG Y F IE+
Sbjct: 311 CDIDLVSIQEKGDAKKFRHGNPEYLDFLIEI 341
>03_05_0057 + 20350971-20351405
Length = 144
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 178 RQPAPGHRGAGPSPGGS 228
RQPAP A P PGG+
Sbjct: 44 RQPAPDRPSAAPEPGGA 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,244
Number of Sequences: 37544
Number of extensions: 288860
Number of successful extensions: 1179
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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