Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D19
(447 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical... 39 0.002
U88174-5|AAB42274.1| 289|Caenorhabditis elegans Tomosyn synapti... 35 0.031
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 35 0.031
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 35 0.031
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 35 0.031
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 35 0.031
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 35 0.031
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 35 0.031
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 35 0.031
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 33 0.072
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 33 0.072
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 33 0.072
AL034364-3|CAA22253.1| 162|Caenorhabditis elegans Hypothetical ... 27 4.7
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 8.2
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 27 8.2
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 27 8.2
U23170-4|AAC46701.1| 463|Caenorhabditis elegans Hypothetical pr... 27 8.2
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 27 8.2
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 8.2
AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 27 8.2
AF016446-8|AAC24168.2| 345|Caenorhabditis elegans Seven tm rece... 27 8.2
AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical... 27 8.2
>AC084158-24|AAM15622.1| 245|Caenorhabditis elegans Hypothetical
protein Y69A2AR.6 protein.
Length = 245
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKY--KDKKWS 140
+ERGE+L ++E+RTE + T A F S+A+++ + K+ KW+
Sbjct: 178 MERGERLENMENRTEALRTSATSFKSTARRVQRHFCQKNLKWT 220
>U88174-5|AAB42274.1| 289|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform b protein.
Length = 289
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 248 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 286
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1017 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1055
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1170 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1208
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1083 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1121
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1092 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1130
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1087 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1125
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1017 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1055
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform A
protein.
Length = 1124
Score = 34.7 bits (76), Expect = 0.031
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 21 ERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKW 137
ER EKL+ D TE + A SS +L+ KY+ KKW
Sbjct: 1083 ERTEKLNATVDATENLKNNAMSLSSRTGKLVEKYEKKKW 1121
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 33.5 bits (73), Expect = 0.072
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKY 122
+ER +KLS L+DR + + A +F SA L KY
Sbjct: 46 LERDQKLSQLDDRADALQEGASQFEKSAATLKRKY 80
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 33.5 bits (73), Expect = 0.072
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKY 122
+ER +KLS L+DR + + A +F SA L KY
Sbjct: 46 LERDQKLSQLDDRADALQEGASQFEKSAATLKRKY 80
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 33.5 bits (73), Expect = 0.072
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 18 VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKY 122
+ER +KLS L+DR + + A +F SA L KY
Sbjct: 46 LERDQKLSQLDDRADALQEGASQFEKSAATLKRKY 80
>AL034364-3|CAA22253.1| 162|Caenorhabditis elegans Hypothetical
protein W06D4.5 protein.
Length = 162
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 63 RMHTQAGEFSSSAQQLMLKYKDKKWSSSELTRSALAAVPT 182
RM + F + +Y D +W +EL R + VPT
Sbjct: 52 RMRSNLPVFKQKESSVRRRYSDFEWVRAELERDSKIVVPT 91
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 248 SMKNNRSLPPGDGPAPRCPGA-GCRNG 171
S N RS PP P PR GA G RNG
Sbjct: 526 SGSNRRSGPPPPPPPPRSSGANGNRNG 552
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 275 ATPRSTIVLSMKNNRSLPPGDGPAPR 198
A P STI S N L G GP+P+
Sbjct: 1364 AAPDSTIASSSSNGSILKNGSGPSPK 1389
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 2 HEAPRRRARGEALPPRGSYRAHAHAGRRVLLLR 100
HE PRR R A P + Y+A A G + +R
Sbjct: 1126 HEEPRRETRQVAQPVKLEYQAMAFIGEDLYAVR 1158
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 2 HEAPRRRARGEALPPRGSYRAHAHAGRRVLLLR 100
HE PRR R A P + Y+A A G + +R
Sbjct: 1126 HEEPRRETRQVAQPVKLEYQAMAFIGEDLYAVR 1158
>U23170-4|AAC46701.1| 463|Caenorhabditis elegans Hypothetical
protein F58F12.3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 69 HTQAGEFSSSAQQLMLKYKDKKWSSSELTRSAL 167
H ++G F S Q L + W+S+ELT S +
Sbjct: 323 HEKSGNFEKSMQFLKDCIDNNSWNSTELTASMI 355
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 26.6 bits (56), Expect = 8.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 199 GVPVPAVGTAASAERVSSELDHFLSLYLSMSCWAEEENSPACVCMRSVRSSRWESFSPRS 20
GV + SA R + H S + ++E N+ + + R+V S FSPRS
Sbjct: 40 GVSKEEILQVNSASRPALPRQHSASTVSPLQSSSDELNNDSGIDNRTVGSPSTSEFSPRS 99
Query: 19 T 17
T
Sbjct: 100 T 100
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 275 ATPRSTIVLSMKNNRSLPPGDGPAPR 198
A P STI S N L G GP+P+
Sbjct: 1364 AAPDSTIASSSSNGSILKNGSGPSPK 1389
>AF043704-2|AAX88816.1| 407|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 72
protein.
Length = 407
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 275 ATPRSTIVLSMKNNRSLPPGDGPAPRCPGAGCRNGSERGA 156
+TP STI S LP GP+P P A S GA
Sbjct: 331 STPTSTISASPSPPSPLPTTSGPSPPSPPAPPHEFSLHGA 370
>AF016446-8|AAC24168.2| 345|Caenorhabditis elegans Seven tm
receptor protein 205 protein.
Length = 345
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 387 RYGL--IFNRLTGAVACTWNR 443
R+G+ IFN++T + C WNR
Sbjct: 308 RHGILEIFNKITRIIMCRWNR 328
>AF003130-13|AAK73876.1| 220|Caenorhabditis elegans Hypothetical
protein F55A12.10 protein.
Length = 220
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 15 AVERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKDKKWSSSELTRSALAAV 176
+V R E+ +E +TE MH Q + +S + K +D + + +L R+ ++A+
Sbjct: 100 SVMRKEQTKKVEKKTEEMHCQLSKLTSFEENNRKKLEDIERENEKL-RNLISAL 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,452
Number of Sequences: 27780
Number of extensions: 221836
Number of successful extensions: 706
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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