Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D19
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 9   HLAVERGEKLSHLEDRTERM 68
           H  +ER EK    +DR ERM
Sbjct: 398 HATIERNEKRLAEQDRRERM 417


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 18  VERGEKLSHLEDRTERMHTQAGEFSSSAQQLMLKYKD 128
           V+ G+K+S LE          G F++     MLK K+
Sbjct: 279 VKTGKKISELEKEMLNGQKLQGPFTAEEVNYMLKAKN 315


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 287 HQNRATPRSTIVLSMKNNRSLPPGDGPAPRCP 192
           HQN   P+S   L++ + RS   G  P    P
Sbjct: 234 HQNSNVPKSVAGLNVSSRRSDMNGTTPLDEKP 265



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 172 PFRQPAPGHRGAGPSPGGSDLLFFIDSTIVD 264
           P  +PA   +  G SP G  L   I   +VD
Sbjct: 655 PLDEPAVHIKQEGQSPEGGKLTRLIKRELVD 685


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 236 CSS*TVLLWTSEWLYSDVTS 295
           C    VL W S W++ + TS
Sbjct: 255 CVLIVVLSWVSFWIHREATS 274


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 287 HQNRATPRSTIVLSMKNNRSL 225
           H N A    TIV++ +NN S+
Sbjct: 477 HLNHADFSYTIVINNRNNTSM 497


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 12   LAVERGEKLSHLEDRTERMHTQAGEFSSSAQQLML 116
            +AVE  +K ++ + R + M  +AG    SA+  ++
Sbjct: 1159 MAVEPTDKQANSKTRRQEMMREAGRGIESAKSYVV 1193


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 193 GHRGAGPSPG 222
           G+R A PSPG
Sbjct: 109 GYRSASPSPG 118



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 184 PAPGHRGAGPSPGG 225
           P  GH G  P+P G
Sbjct: 117 PGMGHMGHTPTPNG 130


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 144 SELTRSALAAVPTAGTGTPGCGSI 215
           +++ R +      A T TPG GS+
Sbjct: 218 AQMGRPSYTTATMATTSTPGSGSL 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,372
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)