Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D18
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 30 0.28
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 29 0.64
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 1.5
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 2.0
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 2.0
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 2.0
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 27 2.0
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 2.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.4
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 25 6.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 7.9
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 25 7.9
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 29.9 bits (64), Expect = 0.28
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 88 PIFIMSCPFNEEQLTQLKLFVELCKTQPQILHHPKLV---FFKEYLGSLGVTIPTAT 249
P F+MSC F + L Q+ L+ + + PK + + +LG LGV + T T
Sbjct: 355 PSFVMSCSFTNQVLAQIALWTDNTSYPLGVHMLPKKLDEEVARLHLGKLGVKLTTLT 411
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 421 DSSKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAI 543
++ E E + ++++++ + E +Y EAIK YTEAI
Sbjct: 10 NAGTESQQEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAI 50
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 364 LDMDGVIEADSLDSNQLMGDSSKEVTDEERD 456
++++G+ E +SL+ NQL GD E+ D
Sbjct: 1273 VELNGLFEENSLNFNQLRGDEKTLAISEKND 1303
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 427 SKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAILDKPP 558
S+++ ++E + +EK +R +E + NE + AIL+ PP
Sbjct: 257 SEDLINKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPP 300
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 421 DSSKEVTDEER----DQSDEKRSEAMRAFSEHQYNEAIKLYTE 537
+ SKE+ D E D+++E R + F + AIK YTE
Sbjct: 382 EKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTE 424
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 364 LDMDGVIEADSLDSNQLMGDSSKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIK 525
++MD VIE S++L + E++++ D+K ++ R E + E+ K
Sbjct: 445 VEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPK 498
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 373 DGVIEADSLDSNQLMGDSSKEVTDEERDQSDEKRSEAMRAFSEHQYN 513
D E D L+ N S KEV+ ++ QSDEK E + F++ ++
Sbjct: 19 DSSSEEDKLEKNIQDETSIKEVSLQDAKQSDEKGVEE-KVFNDESFS 64
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 42 NFLSFVCVLGLPVLNPYFHNELSFQRRTINAI--KIIRG 152
N+++ V+GL NPY L FQR N K+++G
Sbjct: 335 NYVTVGLVVGLDYPNPYVSPALEFQRMKQNPFFAKVLKG 373
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 173 RFYIIQNWYSSKNILDRLGSQYPLLHLVLKASHLP--ETATLLLTMLRVNHRN 325
R +++W+ S ++ DRL + LLH HLP E +TLL + L + N
Sbjct: 108 RLKTLESWFQSLSLQDRLTTLRTLLH------HLPSQEISTLLSSSLTSSPSN 154
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 132 AIKIIRGIMQNSTSDFTSSKIGILQRISW 218
A KI+ M DF ++I IL+R+S+
Sbjct: 58 AAKIMNKKMMEKKQDFVKNEIAILKRVSY 86
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 97 IMSCPFNEEQL----TQLKLFVELCKTQPQILHHPKLVF 201
I+ C NEE + QLKL + LC+ P + + K F
Sbjct: 97 IIKCICNEEHVGIESVQLKLILLLCQNLPNVTTNAKKYF 135
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +2
Query: 431 RKLPMRNEISLMRNVQKL*EHSPSI 505
+KLP++ S++R++++L E +PS+
Sbjct: 177 KKLPLKFAYSILRDLKELLEKTPSL 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,229
Number of Sequences: 5004
Number of extensions: 41386
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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