Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D18
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 80 1e-15
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 38 0.004
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 34 0.093
11_01_0280 + 2080527-2080673,2081585-2081677,2081767-2081928,208... 31 0.65
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 31 0.65
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 30 1.5
10_08_0978 + 21994359-21996961,21997089-21998229 29 2.0
07_01_1027 - 8873582-8876275 29 2.0
06_01_0832 - 6269249-6271794,6272083-6272176 29 2.0
04_04_0955 + 29640612-29643305 29 2.0
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 29 2.0
05_03_0066 + 7980038-7981468 29 2.6
06_01_0429 - 3056302-3056570,3056681-3056951,3057055-3057206,305... 28 4.6
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 6.1
12_01_0645 - 5468344-5470266 27 8.0
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 80.2 bits (189), Expect = 1e-15
Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Frame = +1
Query: 133 QLKLFVELCKTQPQILHHPKLVFFKEYLGSLGVTIPTATFGAKSFTPSG----------- 279
+L+ FVE CK P +L P L FF++YL SLG +P A F + P
Sbjct: 233 ELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAFTKATPKPKSSLQQPSSMDDI 292
Query: 280 ----DSNTSANNAXXXXXXXXXXXXXXXXXXXLDMDG-VIEADSLDSNQLMGDSSKEVTD 444
D + + L+++G ++E+D D Q MGD S +VT+
Sbjct: 293 DDEYDDDDDDDLNMRDATPEPDELDQDIVESDLELEGDIVESDHQDPPQKMGDPSIDVTE 352
Query: 445 EERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAILDKPPKCFIF 573
E RD S E +S+AM A SE + EAI T+AIL P ++
Sbjct: 353 ENRDASQEAKSKAMEAMSEGKLEEAIDHLTKAILLNPLSAIMY 395
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +1
Query: 364 LDMDG-VIEADSLDSNQLMGDSSKEVTDEERDQSDEKRSEAMRAFSE 501
++++G +E D+ D Q MGD S EV+DE+RDQ+ +++ + AFSE
Sbjct: 417 IELEGEAVEPDN-DPPQKMGDPSVEVSDEKRDQAQLCKNKGVDAFSE 462
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 33.9 bits (74), Expect = 0.093
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 460 SDEKRSEAMRAFSEHQYNEAIKLYTEAILDKP--PKCF 567
+DE+R + + F E +Y +A+K YTEAI P PK +
Sbjct: 413 ADEEREKGNQLFKEQKYPDAVKHYTEAIRRNPKDPKVY 450
>11_01_0280 +
2080527-2080673,2081585-2081677,2081767-2081928,
2082375-2082506,2083136-2083170,2083769-2083868,
2083990-2084283
Length = 320
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 433 EVTDEERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAILDK 552
EV + DQSD +R +A+ F E + E Y+EA+ D+
Sbjct: 30 EVWEAHADQSDYEREQAVLRFYEEKEKEIKAAYSEALSDE 69
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 424 SSKEVTDEERDQSDEKRSEAMRAFSEHQYNEAIKLYTEAI 543
SSK+ EE ++ +++ AF E Q+ +AI YTEAI
Sbjct: 479 SSKQAMSEEAAEAAKEKGNI--AFKEKQWQKAINFYTEAI 516
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 421 DSSKEVTDEER-DQ--SDEKRSEAMRAFSEHQYNEAIKLYTEAILDKP--PKCF 567
++ KE+ + ER DQ +D R F + +Y EA YTEA+ P P+ F
Sbjct: 169 EARKEIEERERLDQEAADHHRDRGNDFFKQKRYQEAAMHYTEAMKKNPKDPRVF 222
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 176 FYIIQNWYS-SKNILDRLGSQYPLLHLVLKASHLPETATLLLTMLRVNHRNHPMKN 340
F I N+ S K+ L +L YP + +HLP L LT +R++ R +KN
Sbjct: 735 FSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKN 790
>07_01_1027 - 8873582-8876275
Length = 897
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 176 FYIIQNWYS-SKNILDRLGSQYPLLHLVLKASHLPETATLLLTMLRVNHRNHPMKN 340
F I N+ S K+ L +L YP + +HLP L LT +R++ R +KN
Sbjct: 735 FSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKN 790
>06_01_0832 - 6269249-6271794,6272083-6272176
Length = 879
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 176 FYIIQNWYS-SKNILDRLGSQYPLLHLVLKASHLPETATLLLTMLRVNHRNHPMKN 340
F I N+ S K+ L +L YP + +HLP L LT +R++ R +KN
Sbjct: 717 FSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKN 772
>04_04_0955 + 29640612-29643305
Length = 897
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 176 FYIIQNWYS-SKNILDRLGSQYPLLHLVLKASHLPETATLLLTMLRVNHRNHPMKN 340
F I N+ S K+ L +L YP + +HLP L LT +R++ R +KN
Sbjct: 735 FSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKN 790
>01_05_0251 +
19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 176 FYIIQNWYS-SKNILDRLGSQYPLLHLVLKASHLPETATLLLTMLRVNHRNHPMKN 340
F I N+ S K+ L +L YP + +HLP L LT +R++ R +KN
Sbjct: 735 FSPIDNFASWDKDKLIKLARFYPNDFSSTEMNHLPSALKLFLTEMRIDERFRKVKN 790
>05_03_0066 + 7980038-7981468
Length = 476
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1
Query: 370 MDGVIEADSLDSNQLMGDSSKEVTDEERDQSDE----KRSEAMRAFSEHQYNEAIK 525
+D ++ ++SN + + SKE+T E ++S E ++++A A S EAIK
Sbjct: 393 LDRKLKEKKVESNSTVTEKSKELTSRETEESKEELTSRKTDANDAESASSVAEAIK 448
>06_01_0429 -
3056302-3056570,3056681-3056951,3057055-3057206,
3057419-3057631,3057791-3057959
Length = 357
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 54 FVCVLGLPVLNPYFHNELSFQRRTINAIKIIRGIMQNSTSDFTS 185
FV +GLP+L+PY + S R N + +Q +TS F +
Sbjct: 56 FVQAMGLPLLSPYLQSVGSGYRHGANFATLASTALQPNTSLFVT 99
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 394 SLDSNQLMGDSSKEVTDEERDQSDEKRSEA 483
S DSNQL+ SK + ++ D++DE +E+
Sbjct: 3004 SSDSNQLVNSDSKFESSKKHDKTDETSNES 3033
>12_01_0645 - 5468344-5470266
Length = 640
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 170 LRFYIIQNWYSSKNILDRLGSQYPLLHLVLKASHLPETATL--LLTMLRVNHRNHPMKNQ 343
LR +++W + +D G+ P + VLK S+ +A L + +NHP + +
Sbjct: 415 LRVRSLESWRRFLHGMDNFGAAVPNIMDVLKISYYRLSAELQSCFRYCSLFPKNHPFRKE 474
Query: 344 PLNLMWNLIW 373
L W IW
Sbjct: 475 ELVRAW--IW 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,041,353
Number of Sequences: 37544
Number of extensions: 237117
Number of successful extensions: 738
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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