Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D16
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 123 2e-29
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 119 3e-28
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 27 1.5
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.6
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 26 2.6
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 3.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 4.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.6
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 6.1
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 6.1
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 6.1
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 25 8.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 8.0
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 8.0
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 123 bits (296), Expect = 2e-29
Identities = 59/102 (57%), Positives = 73/102 (71%)
Frame = +2
Query: 26 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPMCGQCKSKLRGIQPARPA 205
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IP CG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 206 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 331
E +RL + KKTV+R YGG L VK RIVRAFLIEEQKIVK
Sbjct: 61 EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 119 bits (286), Expect = 3e-28
Identities = 57/102 (55%), Positives = 72/102 (70%)
Frame = +2
Query: 26 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPMCGQCKSKLRGIQPARPA 205
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IP CG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 206 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 331
E +RL + +K V+R YGG L VK RIVRAFLIEEQKIVK
Sbjct: 61 EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +1
Query: 271 QMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQVNVRFYIKNNKNPRAEFGTRLDK 450
Q+RE A R+ +TE ++ + A +++ W K ++V + +N + + + K
Sbjct: 488 QVREQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEK---RNTRREKRKSKKEFLK 544
Query: 451 KIQNAASH 474
+N AS+
Sbjct: 545 AQKNEASN 552
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 304 LDRRTEDRESPKSATGQHKVWQKGRQVNVRFYIKNNKN 417
L R+ D P+S + QH + Q+ ++ +R YIKN N
Sbjct: 253 LPSRSSDTNDPQSDS-QHVLRQERMRIELRQYIKNILN 289
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 47 RRRLSYNTKSN-QRRIVRTPGGRLVY 121
R+ SY T + +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 387 IYLAAFLPDFMLACCAFRTFTIFCSS 310
I+L A + + L+CC T I+CSS
Sbjct: 13 IHLKAIIEEPKLSCCHCETCRIWCSS 38
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 4.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Frame = +2
Query: 122 QYVKKPKKIPMCGQCKSKLRG-------IQPARPAERSR---LCYRKKTVKRVYG 256
Q + K KK P+C C SK I+ + P ++S+ LC R V R YG
Sbjct: 659 QKILKLKKTPICRWCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYVWRYYG 713
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 346 TGQHKVWQKGRQVNVRFYIKN 408
TG H+V Q+G VN+ YI N
Sbjct: 1108 TGTHQV-QQGTNVNINLYISN 1127
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 211 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATG 351
FSS L + +R ++ L++ HRQ F+ RTE+ + ++A+G
Sbjct: 22 FSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEE-AAARTASG 67
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 47 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPK 142
RR + N KS+++R PG L + KPK
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPK 275
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 141 LGFLTYWYTKRPPGVRTILL 82
+GFL Y+Y K P G R +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 10 VKKLQNGAAAYIQTTFVLQHKVKPKENSTN 99
+ KLQN Y+ + Q KV PK TN
Sbjct: 502 ILKLQNMPGTYVDKWTLDQEKVMPKNLKTN 531
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 405 FYVKPYIYLAAFLPDFMLACCAFRT 331
F KP++ L AF+P ++ C FRT
Sbjct: 209 FVPKPFMSLMAFIPAYLEVC--FRT 231
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 409 YFLCKTLHLLGGLFARLY 356
+++C L LLGG + LY
Sbjct: 1488 FYICDELQLLGGFYGPLY 1505
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 159 PHIGIFLGFLTYWYTKRPPGVRT 91
PHIG +LG L W + RT
Sbjct: 26 PHIGNYLGSLKQWVQLQEEAART 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,779
Number of Sequences: 5004
Number of extensions: 33774
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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