Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D16
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 126 7e-30
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 126 7e-30
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 125 2e-29
12_01_0900 - 8724339-8724380,8725263-8725376,8726491-8726559,872... 29 1.5
01_05_0589 + 23459847-23460344,23460493-23461296 28 3.5
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 28 4.6
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 28 4.6
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475... 27 8.0
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 126 bits (305), Expect = 7e-30
Identities = 64/104 (61%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +2
Query: 26 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPMCGQCKSKLRGIQPARPA 205
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 206 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 331
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 126 bits (305), Expect = 7e-30
Identities = 64/104 (61%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +2
Query: 26 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPMCGQCKSKLRGIQPARPA 205
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 206 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 331
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 125 bits (302), Expect = 2e-29
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Frame = +2
Query: 26 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPMCGQCKSKLRGIQPARPA 205
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 206 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 331
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104
>12_01_0900 -
8724339-8724380,8725263-8725376,8726491-8726559,
8726665-8726824,8726905-8726961,8728080-8728258,
8728332-8728442,8728512-8728535,8729993-8730107,
8730665-8730720,8731595-8731807
Length = 379
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 CSLSQMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQVNVRFY-IKNNKNPRAEFG 435
C+ S + +Q D+ D + TGQ K++ GR++ R Y I+ E G
Sbjct: 201 CNASCQSRNSKKQKLWDKTAADLQISLENTGQKKMFFGGREILARKYEIRLRGIDAPEIG 260
Query: 436 TRLDKKIQNA 465
+ K+ Q+A
Sbjct: 261 MQYGKESQDA 270
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 219 RRERSAGLAGWIPRSLLLH*PHIGIFL 139
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 59 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPMCGQCKSKLRGIQPARPAERS 214
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 222 QRRERSAGLAGWIPRSLLLH*PHIGIFL 139
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
>03_04_0153 +
17745473-17745889,17746120-17746272,17747307-17747512,
17747752-17747959
Length = 327
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +1
Query: 226 PQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQVNVRFYIK 405
P ED R W +++ + A L+R E+ +S +A + ++ R+ VR ++
Sbjct: 80 PSEDEAQREWEAEMARRLKEAEEMEELERTAEELQSQAAAEAPDESEEEKRE-RVRRELQ 138
Query: 406 NNKNPRAE 429
+AE
Sbjct: 139 KVAKEQAE 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,385
Number of Sequences: 37544
Number of extensions: 232997
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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