Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D16
         (487 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34 pro...   133   4e-31
CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.               128   8e-30
CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.               128   8e-30
BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34 p...   128   8e-30
BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34 p...   128   8e-30
BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34 p...   128   8e-30
AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34 p...   128   8e-30
AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34 p...    59   9e-09

>L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  133 bits (321), Expect = 4e-31
 Identities = 68/107 (63%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  KLRG++P R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGKLRGVRPVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK-IVKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQK IVKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIIVKVL 107


>CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score =  128 bits (310), Expect = 8e-30
 Identities = 66/107 (61%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score =  128 bits (310), Expect = 8e-30
 Identities = 66/107 (61%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  128 bits (310), Expect = 8e-30
 Identities = 66/107 (61%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  128 bits (310), Expect = 8e-30
 Identities = 66/107 (61%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  128 bits (310), Expect = 8e-30
 Identities = 66/107 (61%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score =  128 bits (310), Expect = 8e-30
 Identities = 66/107 (61%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +2

Query: 26  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPM--CGQCKSKLRGIQPAR 199
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 200 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 337
           P    RL   KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61  PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34
           protein.
          Length = 45

 Score = 58.8 bits (136), Expect = 9e-09
 Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
 Frame = +2

Query: 35  RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIP--MCG 160
           RLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P   CG
Sbjct: 1   RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACG 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,122,834
Number of Sequences: 237096
Number of extensions: 1287609
Number of successful extensions: 3530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3522
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)