Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D15
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0852 + 20289439-20289721,20289858-20290642                       29   0.94 
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           28   2.9  
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    27   3.8  
04_04_0311 - 24309411-24309525,24309627-24309841                       27   5.0  
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239           26   8.7  
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570...    26   8.7  
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610...    26   8.7  

>04_03_0852 + 20289439-20289721,20289858-20290642
          Length = 355

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 177 QRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTKPRAA--SCR 13
           Q ++P S  L  P ++ P  + P   P     ++QN   S PDCT+ +PRA    CR
Sbjct: 26  QPLSPDSPILRDPNVI-PIYMTPGSSPTVASCYNQNNTASGPDCTV-EPRACPRGCR 80


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 165 PVSLHLHSPPLVQPCKLPPCIIPNTIHAFS 76
           PV      PP+ Q C   PC  P++   FS
Sbjct: 50  PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79


>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 197 CIWRTQTQCELRAWRTERSC*NFRRSSWS 283
           CI ++ T  ELR+WR   +  N  R  W+
Sbjct: 234 CIGKSLTMWELRSWRPYGTTINLMRHKWA 262


>04_04_0311 - 24309411-24309525,24309627-24309841
          Length = 109

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 191 ERCIWRTQTQCELRAWRTERSC*NFRRSSWS 283
           +RC+ R + + EL +WRT     + RR S S
Sbjct: 57  DRCVQRMRARRELCSWRTRNLWGSLRRGSTS 87


>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
          Length = 569

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 174 RIAPVSLHLHSPPLVQPCKLPP 109
           R++P+ L   +PPL  P  LPP
Sbjct: 106 RVSPIDLDDSAPPLPLPLPLPP 127


>06_01_0762 +
           5699619-5699744,5699831-5699891,5699979-5700078,
           5700436-5700560,5700631-5700706,5701122-5701164
          Length = 176

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 189 EKDASGEHKLNVNFEPGELREAARTFEE 272
           +KD  GEHK      PG L +A +T EE
Sbjct: 112 DKD-QGEHKRGAEVHPGYLPQAFQTVEE 138


>01_05_0439 -
           22159425-22159520,22160137-22160345,22161028-22161066,
           22161196-22161356,22161447-22161518,22162002-22162183,
           22162580-22162703,22164196-22164299,22165526-22165725,
           22165838-22166069,22166156-22166239,22166329-22166386,
           22166724-22166771,22167924-22168081,22168451-22168501,
           22168585-22168658,22168760-22168835,22169685-22169729,
           22169833-22169899,22169978-22170095,22170580-22170775,
           22171551-22171640,22171985-22172039,22172755-22172975,
           22173362-22173454,22173608-22173721,22173918-22173981,
           22174081-22174181,22174306-22174447,22174528-22174729,
           22174883-22174976,22176172-22176348
          Length = 1248

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 174 RIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNL 67
           ++ P S  L+ PP   P +LP C++P  +  +S  L
Sbjct: 41  QLPPSSHALYPPP---PPQLPTCVLPAGVRIYSSGL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,771
Number of Sequences: 37544
Number of extensions: 179698
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)