Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D15
         (382 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537517-1|CAD97770.1|  295|Homo sapiens hypothetical protein pr...    30   2.2  
BC039121-1|AAH39121.1|  510|Homo sapiens SYNE1 protein protein.        30   2.2  
AL357081-3|CAI41324.1|  675|Homo sapiens RP11-809I23.2 protein.        30   2.2  
AL049548-6|CAI42747.1|  675|Homo sapiens RP11-809I23.2 protein.        30   2.2  
AK056122-1|BAB71097.1|  560|Homo sapiens protein ( Homo sapiens ...    30   2.2  
AF535142-1|AAN03486.1| 8749|Homo sapiens enaptin protein.              30   2.2  
AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.            30   2.2  

>BX537517-1|CAD97770.1|  295|Homo sapiens hypothetical protein
           protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186 IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
           + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 179 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 216


>BC039121-1|AAH39121.1|  510|Homo sapiens SYNE1 protein protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186 IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
           + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 227 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 264


>AL357081-3|CAI41324.1|  675|Homo sapiens RP11-809I23.2 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186 IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
           + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 211 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 248


>AL049548-6|CAI42747.1|  675|Homo sapiens RP11-809I23.2 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186 IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
           + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 211 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 248


>AK056122-1|BAB71097.1|  560|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31560 fis, clone NT2RI2001409, weakly similar to
           DYSTROPHIN. ).
          Length = 560

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186 IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
           + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 193 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 230


>AF535142-1|AAN03486.1| 8749|Homo sapiens enaptin protein.
          Length = 8749

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186  IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
            + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 3118 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 3155


>AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.
          Length = 8797

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 186  IEKDASGEHKLNVNFEPGELREAARTFEEARGQITKYT 299
            + +  +G+HKLN+    GEL     T E+A+G   K T
Sbjct: 3111 LSESENGQHKLNMMLSKGELLSTLLTKEKAKGIQAKVT 3148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,404,186
Number of Sequences: 237096
Number of extensions: 1038905
Number of successful extensions: 2185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2182
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)