Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D14
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 38 9e-04
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 35 0.006
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 34 0.011
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 32 0.044
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.058
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 31 0.10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 30 0.18
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 0.31
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 29 0.41
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 0.71
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 0.71
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 0.94
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 2.2
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 2.2
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 2.9
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 26 2.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 3.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 3.8
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 3.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 3.8
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 5.0
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 5.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 5.0
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.7
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 6.7
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 24 8.8
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 24 8.8
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 24 8.8
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 37.5 bits (83), Expect = 9e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 20 LREVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
LR + +VDLRA+AK G+SGAD+ V QR +
Sbjct: 680 LRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAV 714
Score = 33.1 bits (72), Expect = 0.019
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
+ I+ + +KL +VDL IA + GY G+D+ ++C
Sbjct: 401 LRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLC 435
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 34.7 bits (76), Expect = 0.006
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
+ I+ R + L +DL++IA+K++G SGA++ VC
Sbjct: 326 LRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVC 360
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.9 bits (74), Expect = 0.011
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVCQ 115
V I ++K +VDL IA+K +G SGA++ +CQ
Sbjct: 723 VKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQ 758
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 31.9 bits (69), Expect = 0.044
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 14 INLREVKLDPEVDLRAIAKKLDGYSGADITNV 109
I+L +V E+D A+ K DG +GAD+ NV
Sbjct: 314 IHLEKVSKQGEIDYEALVKLTDGTNGADLRNV 345
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.058
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 186 KEELDLPVTKQDFMEALAKCNKSVSNGDIQKY 281
++ L+L +TK+DF+ +L K S+S ++ +Y
Sbjct: 909 QDSLELRITKEDFLTSLKKLRPSISEQELHRY 940
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 30.7 bits (66), Expect = 0.10
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 23 REVKLDPEVDLRAIAKKLDGYSGADITNV 109
R V L +VDL IA+ G++GAD+ N+
Sbjct: 452 RHVPLGKDVDLSIIARGTSGFAGADLANL 480
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 29.9 bits (64), Expect = 0.18
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 14 INLREVKLDPEVDLRA--IAKKLDGYSGADITNVC 112
++L+ +K +DL A +A G++GADI NVC
Sbjct: 478 VHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVC 512
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.31
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 207 VTKQDFMEALAKCNKSVSNGDIQKYLSWMTEFGS 308
+T +DF A+ K +++ GDI+K+ + +FG+
Sbjct: 397 LTVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFGA 430
Score = 28.3 bits (60), Expect = 0.54
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 50 DLRAIAKKLDGYSGADITNVCQRCI 124
D + +AK DGYSG+DI+ V + I
Sbjct: 319 DFKELAKMTDGYSGSDISIVVRDAI 343
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 0.41
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
+ I+ R++ +D +++ +A+ D Y+GA + +VC
Sbjct: 365 LRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVC 399
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 0.71
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 186 KEELDLPVTKQDFMEALAKCNKSVSNGDIQKYLSWMTEFGS 308
K E P+ DF ++ SV+ +++Y W EFGS
Sbjct: 698 KMESIRPINLDDFKTSIKVIRPSVNLQGLERYSEWDKEFGS 738
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 0.71
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 192 ELDLPVTKQDFMEALAKCNKSVSNGDIQKYLSWMTEFGS 308
E+ P++ F +L SVS I +Y W +FGS
Sbjct: 620 EMIPPISLNHFKASLRTIRPSVSQEGIHRYEEWNKQFGS 658
Score = 27.5 bits (58), Expect = 0.94
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 2 HEVHINLREVKLDPEVDLRAIAKKLDGYSGADIT 103
H H+ +V E DL + +GYSG+DIT
Sbjct: 563 HLSHLLHNQVHCLTEEDLEELVNLTEGYSGSDIT 596
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.5 bits (58), Expect = 0.94
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 29 VKLDPEVDLRAIAKKLDGYSGADI 100
+KL + D R +AK+ GY GAD+
Sbjct: 362 LKLSGDFDFRQLAKQTPGYVGADL 385
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 LAKEELD-LPVTKQDFMEALAKCNKS 254
L+ EEL+ L + QDF+EALAK S
Sbjct: 452 LSPEELEPLAICPQDFIEALAKVQPS 477
Score = 25.8 bits (54), Expect = 2.9
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 114 RDASMMSMRRK----IAGLKPEQIKQLAKEELDLPVTKQDFMEALAKCNKSVSNGDIQKY 281
R+A++ ++R IA +PE + A E + VT DF A SVS+ D QKY
Sbjct: 706 REAAVTALRSAVFADIASNEPEITQHSALEPIR--VTNADFELAFKNIKPSVSDRDRQKY 763
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDG-YSGADITNVCQRC 121
E++ DP V++R K L YSG D +VC C
Sbjct: 1144 EIEYDPHVEMRICPKTLTPVYSGDDF-DVCSVC 1175
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 2 HEVHINLREVKLDPEVDLRAIAKKLDGYS 88
HE ++ RE K VD IAK+L YS
Sbjct: 873 HEFILDAREFKATAGVDATDIAKRLQDYS 901
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 147 IAGLKPEQIKQLAKEELDLPVTKQDFMEALAKCNK 251
+ GL PE ++ D PVT + F+ ++ +CNK
Sbjct: 126 VTGLYPESHGIVSNNFFD-PVTGKQFVNSMPECNK 159
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = -1
Query: 252 TCYTWQVXXXXXXXXXXXPTLPWQAV*FVPVSDRLFYVASTSLMHLW 112
TC W V T P AV P + S L+HLW
Sbjct: 486 TCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLW 532
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 184 PRKSWTCPSPSRTSWRHLPSVTS 252
P++S+T P+ S S R + S+TS
Sbjct: 348 PQRSYTAPNTSFNSQRRMSSITS 370
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 41 PEVDLRAIAKKLDGYSGADITNVC-QRCINDVDAT 142
PE +A+K GY GAD+ +C + +N + T
Sbjct: 460 PEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRT 494
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 313 QEEPNSVIHDRYFCISPLETDLLHLAS 233
Q+EP S+ H RY + +TD HL S
Sbjct: 52 QKEPVSIPHGRYTWSTSPDTDSSHLPS 78
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 41 PEVDLRAIAKKLDGYSGADITNVC-QRCINDVDAT 142
PE L +A+ GY GAD+ +C + +N V T
Sbjct: 566 PESYLLHLAESTSGYGGADLKALCTEAALNAVRRT 600
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 35 LDPEVDLRAIAKKLDGYSGADITNVCQ 115
L PEVDL + D SGA I + Q
Sbjct: 324 LSPEVDLDTFIMRPDASSGAQIAAIMQ 350
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +2
Query: 2 HEVHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
H + I+ + + +D ++ IA+ +GA++ +VC
Sbjct: 357 HILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVC 393
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 175 NSLPRKSWTCPSPSRTSWRHLPSVTSRSPMAIYRN 279
+S P ++ P PS RH+ S TS P A+ N
Sbjct: 98 SSKPNQTTAMPPPSNNPSRHVSS-TSNKPAAVSPN 131
>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 24.6 bits (51), Expect = 6.7
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = -1
Query: 393 LHNIVFNTILFCF 355
LHN++ +T++FCF
Sbjct: 9 LHNVLSHTVVFCF 21
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 233 CLHEVLLGDGQVQLFLGKLFDLFRFQTGYFTS 138
CL +LG G +FLG L D+ + YF S
Sbjct: 122 CLSMNILGSGLGPMFLGPLSDIGGRKPVYFCS 153
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 183 AKEELDLPVTKQDFMEALAKCNKSVSNGDIQKY 281
AKE+ D P +DF++ L+ +S+S G +Y
Sbjct: 74 AKEKKDNPKYPKDFIKYLSLALESISMGKEPEY 106
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 208 SPSRTSWRHLPSVTSRSPM 264
+PS S HLP V S+SP+
Sbjct: 283 TPSYMSANHLPKVDSKSPI 301
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 138 RRKIAGLKPEQIKQLAKEELDLPVTKQD 221
RRK GL Q A+ ++ LP+T ++
Sbjct: 380 RRKTGGLNTRPYPQHAESQMSLPLTAKE 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,804
Number of Sequences: 5004
Number of extensions: 35768
Number of successful extensions: 130
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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