Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D14
(435 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 40 8e-04
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 40 8e-04
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 34 0.051
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 33 0.089
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 33 0.089
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 31 0.48
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 30 0.83
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 30 0.83
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 29 1.1
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 29 1.1
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 29 1.9
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 29 1.9
AF022975-8|AAB70667.4| 195|Caenorhabditis elegans Hypothetical ... 29 1.9
AF125443-2|AAD12800.1| 243|Caenorhabditis elegans Hypothetical ... 28 3.4
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 27 4.4
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 27 4.4
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 27 4.4
AC006723-5|AAK68424.1| 575|Caenorhabditis elegans Hypothetical ... 27 4.4
Z54342-4|CAA91150.1| 447|Caenorhabditis elegans Hypothetical pr... 27 5.9
AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical ... 27 5.9
AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical ... 27 5.9
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 27 5.9
Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 27 7.8
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 27 7.8
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 27 7.8
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 7.8
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 27 7.8
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 27 7.8
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 27 7.8
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 27 7.8
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.9 bits (89), Expect = 8e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 17 NLREVKLDPEVDLRAIAKKLDGYSGADITNVCQR 118
+LR+ L ++DL +AK G+SGAD+T +CQR
Sbjct: 665 SLRKTPLSADLDLNFLAKNTVGFSGADLTEICQR 698
Score = 33.1 bits (72), Expect = 0.089
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
+ I+ + +KL +VDL +A + G+ GAD+ ++C
Sbjct: 386 LRIHTKNMKLGEDVDLEQVANECHGFVGADLASLC 420
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.9 bits (89), Expect = 8e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 17 NLREVKLDPEVDLRAIAKKLDGYSGADITNVCQR 118
+LR+ L ++DL +AK G+SGAD+T +CQR
Sbjct: 665 SLRKTPLSADLDLNFLAKNTVGFSGADLTEICQR 698
Score = 33.1 bits (72), Expect = 0.089
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
+ I+ + +KL +VDL +A + G+ GAD+ ++C
Sbjct: 386 LRIHTKNMKLGEDVDLEQVANECHGFVGADLASLC 420
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 17 NLREVKLDPEVDLRAIAKKLDGYSGADITNVCQR 118
+LR+ L ++DL +AK G+SGAD+T +CQR
Sbjct: 667 SLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQR 700
Score = 33.1 bits (72), Expect = 0.089
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
+ I+ + +KL +VDL IA + G+ GAD+ ++C
Sbjct: 387 LRIHTKNMKLADDVDLEQIANECHGFVGADLASLC 421
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 33.9 bits (74), Expect = 0.051
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
VH+ LD V R +A G+SGADI+NVC
Sbjct: 476 VHLGPLRTSLDKTVLSRKLAAHTPGFSGADISNVC 510
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.089
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 14 INLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
I+ ++ E+D A+ K DG+S AD+ NVC
Sbjct: 324 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVC 356
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 33.1 bits (72), Expect = 0.089
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 14 INLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
I+ ++ E+D A+ K DG+S AD+ NVC
Sbjct: 332 IHSNKITKHGEIDFEAVVKLSDGFSAADLRNVC 364
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVCQ 115
+++ LR K++ V+L IA+ +G SG+D+ VC+
Sbjct: 256 LNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCR 291
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 8 VHINLREVKLDPEVDLRAIAKKLDGYSGADITNVCQ 115
+++ LR K++ V+L IA+ +G SG+D+ VC+
Sbjct: 259 LNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCR 294
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 20 LREVKLD--PEVDLRAIAKKLDGYSGADITNVC 112
+R++KLD P+ + +A G++GADI NVC
Sbjct: 474 MRKIKLDHAPQEYSQRLAALTPGFTGADIMNVC 506
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 20 LREVKLD--PEVDLRAIAKKLDGYSGADITNVC 112
+R++KLD P+ + +A G++GADI NVC
Sbjct: 474 MRKIKLDHAPQEYSQRLAALTPGFTGADIMNVC 506
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 32 KLDPEVDLRAIAKKLDGYSGADI 100
K+DP VDL I+K+ +SGA++
Sbjct: 496 KMDPNVDLEDISKRTKNFSGAEL 518
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 32 KLDPEVDLRAIAKKLDGYSGADI 100
K+DP VDL I+K+ +SGA++
Sbjct: 496 KMDPNVDLEDISKRTKNFSGAEL 518
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 32 KLDPEVDLRAIAKKLDGYSGADI 100
K+DP VDL I+K+ +SGA++
Sbjct: 430 KMDPNVDLEDISKRTKNFSGAEL 452
>Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical
protein C11H1.4b protein.
Length = 270
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 32 KLDP-EVDLRAIAKKLDGYSGADI 100
KL P +VD +A+K DG+SGAD+
Sbjct: 186 KLKPTDVDFECLAQKTDGWSGADL 209
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical
protein C11H1.4a protein.
Length = 996
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 32 KLDP-EVDLRAIAKKLDGYSGADI 100
KL P +VD +A+K DG+SGAD+
Sbjct: 912 KLKPTDVDFECLAQKTDGWSGADL 935
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 32 KLDP-EVDLRAIAKKLDGYSGADI 100
KL P +VD +A+K DG+SGAD+
Sbjct: 912 KLKPTDVDFECLAQKTDGWSGADL 935
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 44 EVDLRAIAKKLDGYSGADITNVCQRCINDVDAT*NSRSETGTNQTA 181
E++ +A + +G+SGAD+ ++C+ +V +++S G TA
Sbjct: 383 EINYDDLAARTEGFSGADVVSLCRTAAINVLRRYDTKSLRGGELTA 428
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 44 EVDLRAIAKKLDGYSGADITNVCQRCINDVDAT*NSRSETGTNQTA 181
E++ +A + +G+SGAD+ ++C+ +V +++S G TA
Sbjct: 383 EINYDDLAARTEGFSGADVVSLCRTAAINVLRRYDTKSLRGGELTA 428
>AF022975-8|AAB70667.4| 195|Caenorhabditis elegans Hypothetical
protein K09C6.9 protein.
Length = 195
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -3
Query: 328 YYLLNQEEPNSVIHDRYFCISPLETDLLHLASASMKSCLVTGKSNSSLASCLICSGF 158
+Y + EP D +F P + +L+ A K+C++ N ++A+ + SGF
Sbjct: 37 FYTAKEMEPILACADTHFYNDPKDPELVSKA----KTCVINNSMNKAIAAMNLYSGF 89
>AF125443-2|AAD12800.1| 243|Caenorhabditis elegans Hypothetical
protein H32C10.2 protein.
Length = 243
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 266 RYTEIPIVDDGIRFLLIQKIIVTKTDEII*KQNKMVLNTILCRVMRY 406
++TE + + +RFLL KTD+ K N L+T LC V R+
Sbjct: 150 KFTEFVLTEHALRFLL-----EVKTDKKKKKGNGNRLDTFLCEVKRF 191
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 14 INLREVKLDPEVDLRAIAKKLDGYSGADITNVC 112
I+ R++ L +++ IA+++ G SGA++ +VC
Sbjct: 341 IHSRKMNLMRGINMAKIAEQIPGASGAEVKSVC 373
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 29 VKLDPEVDLRAIAKKLDGYSGADITNVCQ 115
+ L +VDL + D SGADI ++CQ
Sbjct: 348 MNLSDDVDLEDWVARPDKISGADINSICQ 376
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 165 EQIKQLAKEELDLPVTKQDFMEALAKCNKSVSNGDIQKYLSWMTEFG 305
+ I+ + K+++ VT DF EA +V + + Y +W +FG
Sbjct: 540 DDIETIDKDDIRA-VTVMDFAEAARVVRPTVDDSQLDAYAAWDKKFG 585
>AC006723-5|AAK68424.1| 575|Caenorhabditis elegans Hypothetical
protein Y19D10B.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -3
Query: 295 VIHDRYFCISPLETDLLHLASASMKSCLVTGK---SNSSLASCLICS 164
++ DRYFCISP E L L+S ++ + + GK SS+++ +C+
Sbjct: 368 MVPDRYFCISPQEM-LNFLSSDNVLTPEINGKYCDLPSSVSNGTVCN 413
>Z54342-4|CAA91150.1| 447|Caenorhabditis elegans Hypothetical
protein C08H9.7 protein.
Length = 447
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 419 IVKTHISLLCIILCLTPFCFVF 354
IVK + L+ IIL TPF FVF
Sbjct: 30 IVKPCVILVAIILISTPFVFVF 51
>AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical
protein Y108F1.1 protein.
Length = 238
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 20 LREVKLD--PEVDLRAIAKKLDGYSGADITNVC 112
+R++KLD P+ + +A ++GADI NVC
Sbjct: 120 MRKIKLDHAPQEYSQRLAVLTPSFTGADIMNVC 152
>AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical
protein Y47C4A.1 protein.
Length = 238
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 20 LREVKLD--PEVDLRAIAKKLDGYSGADITNVC 112
+R++KLD P+ + +A ++GADI NVC
Sbjct: 120 MRKIKLDHAPQEYSQRLAVLTPSFTGADIMNVC 152
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +3
Query: 108 FARDASMMSMRRKIAGLKPEQIKQLAKEELDLPVTKQDFMEALAKCNKSVSNGDIQKYLS 287
+A A+ ++ A + +Q +LAK++ V ++D A S +GD
Sbjct: 539 YAMQAAAQQQEQQRAQMAAQQEAKLAKQQTTQQVAQKDTASAQNSTGGSAKDGDADYSAQ 598
Query: 288 WM 293
W+
Sbjct: 599 WL 600
>Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical
protein F20E11.10 protein.
Length = 338
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -2
Query: 431 LSRIIVKTHISLLCIILCLTPFCFVFKLFHRSLSLLSFE 315
L IIV++ + ++C I+ L F F F + + L++F+
Sbjct: 244 LFAIIVQSSVQMICFIIPLLTFWFAFLEGYYNQGLVNFQ 282
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +2
Query: 44 EVDLRAIAKKLDGYSGADITNVCQ 115
E++ +A + +G+SGAD+ ++C+
Sbjct: 383 EINYDDLAARTEGFSGADVVSLCR 406
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 582 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 613
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 580 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 611
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 582 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 613
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 582 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 613
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 580 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 611
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 582 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 613
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 404 ISLLCIILCLTPFCFVFKLFHRSLSL 327
ISL C+++ + FCF+F L S S+
Sbjct: 567 ISLGCMLVDVAKFCFIFVLIISSFSI 592
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 404 ISLLCIILCLTPFCFVFKLFHRSLSL 327
ISL C+++ + FCF+F L S S+
Sbjct: 547 ISLGCMLVDVAKFCFIFVLIISSFSI 572
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 26 EVKLDPEVDLRAIAKKLDGYSGADITNVCQRCI 124
E K PE L AIA++ GY GAD+ +C +
Sbjct: 582 ENKPIPET-LDAIAERTSGYCGADLKFLCTEAV 613
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 404 ISLLCIILCLTPFCFVFKLFHRSLSL 327
ISL C+++ + FCF+F L S S+
Sbjct: 547 ISLGCMLVDVAKFCFIFVLIISSFSI 572
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,993,320
Number of Sequences: 27780
Number of extensions: 202356
Number of successful extensions: 587
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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