Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D13
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    34   0.019
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   2.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   3.7  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   3.7  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   3.7  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.9  

>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 276 GADCGAVGHCIATVWETENVDISPNEVSVKFVRLFRQLKDIKDLINE 416
           G D G    C+A VWET NV+I PN+   +    F    + + L+ +
Sbjct: 10  GIDLGTTYSCVA-VWETANVEIIPNDQGARTTPSFVAFTETERLVGD 55


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 341 YVYIFCFPHCSYTMTYG---PTVSATLETLTPNLRSF 240
           +++I+CF   S+   YG    T++ TL  +  N+R+F
Sbjct: 411 FIHIYCFKITSWVNLYGWITCTIARTLSFIKLNIRTF 447


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 590 FLVITHADDSAHRFRSCVRFEYMMHVLFQIGCVFFAYLSACW 465
           F+   H   S H F+      Y + +L  I    F YLS C+
Sbjct: 37  FVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSKCY 78


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 593 KFLVITHADDSAHRFRSCVRFEYMMHVLFQIGCVF 489
           KF+  T  DDS  R  +C+R  Y    L +   VF
Sbjct: 603 KFVKYTIDDDSVERIMNCIRAIYSFEELPEFQTVF 637


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 367 NLTETSLGDMSTFSVSHTVAIQ*PTAPQSAPRL 269
           NL+  SL  +  + + H+V+I+ P+    +PRL
Sbjct: 488 NLSVQSLKQLEVYPIRHSVSIEMPSEKLLSPRL 520


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 290 PTVSATLETLTPNLRSFGAFLWDLSC 213
           P   AT E  T    SFGA +WDL C
Sbjct: 57  PDGIATPEPETKKKLSFGARVWDLIC 82


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 165  QMCLSWLLFTT*CDPVSYSASTNNTK*ILGSFTLNVIAYRLINKSSGPS 19
            Q CL+ L       P  ++ ++NNTK I      N ++  LI K   PS
Sbjct: 2426 QKCLTTLAEIGPLSPFKFTDASNNTKFISRDIVANGLSKILILKDYDPS 2474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,927
Number of Sequences: 5004
Number of extensions: 57125
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)