Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D13
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903...    33   0.18 
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084...    28   6.7  
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    27   8.9  
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90...    27   8.9  

>11_06_0115 + 20288220-20288303,20289223-20289706,20290160-20290393,
            20291811-20292770,20292931-20293404,20293406-20294664
          Length = 1164

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 171  LFSVAILCCSNLSFARQVPKECSKGPEVWCQSLKRGADCGAVGHCIATVWETENVDISPN 350
            +FS   +  S+     Q+P+E +    +   +L R    G +   I ++W  E++D+S N
Sbjct: 960  IFSAVNIDLSSNYLVGQIPEEIASLALLKNLNLSRNYLSGKIPQKIGSLWSLESLDLSRN 1019

Query: 351  EVSVKFVRLFRQLKDIKDL-INEEYLGARISS 443
            ++S +       L  + DL ++   L  RI S
Sbjct: 1020 KLSGEIPPSLSNLSYLSDLDLSHNNLSGRIPS 1051


>09_02_0621 -
           11307417-11307813,11308078-11308246,11308372-11308440,
           11308635-11308761,11308985-11309253,11309356-11309522,
           11309730-11309801,11310205-11310329
          Length = 464

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 1   CCRNSARGTGRLVYQSIRNNIQSETAKYLFCIVCTCRVRNWIALSREQQP 150
           C R S  G G   + +  +++++   KYL  ++  C  +N +AL  E  P
Sbjct: 195 CSRKSVHGQGIKEFLAEVDSLKTVHYKYLVMLIGYCTNKNHLALIYEYMP 244


>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 306 IATVWETENVDISPNEVSVKFVRLFRQLKDIKDLINEEYLG-ARISSACHDVQYPAGAKI 482
           + T W    +  +P++ +   V LF+ +  I  +IN+ +L  A    +C +  Y    ++
Sbjct: 322 VTTEWAMYELAKNPDKQARNIVTLFQLIVGILGIINQSFLFLAFFLLSCQERLYQEIREV 381

Query: 483 CKENTANLE 509
           C + T   E
Sbjct: 382 CGDETVTEE 390


>02_01_0124 +
           901034-901153,901455-901481,901713-901792,903739-903811,
           904015-904072,904561-904615,905140-905164,905361-905421,
           907416-907531,907661-907812,907918-908003,908182-908309,
           908451-908501,908774-908860,908964-909033,909351-909407,
           909729-909865,910313-910390,910971-911057
          Length = 515

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 144 ATMTSTFVCLFSVAILCCSNL-SFARQVPKECSKGPEVWC 260
           A +T+ F  L  +A LC + L S  R +PKE +    VWC
Sbjct: 241 AVLTAYFFIL-GIAALCATLLPSIKRFLPKEWNDNAIVWC 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,398
Number of Sequences: 37544
Number of extensions: 363240
Number of successful extensions: 1009
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)