Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D13
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    36   0.030
AF039045-11|AAB94202.1|  259|Caenorhabditis elegans Hypothetical...    30   1.5  
AC024776-12|AAK68460.1|  263|Caenorhabditis elegans Delta/serrat...    29   3.5  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   8.0  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   8.0  

>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
            protein Y67A10A.3 protein.
          Length = 1237

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 157  LVMVAVHDLMRSSFVLCKYKQYKINTWQFHFECYCVSIDKQVVRSLVPN 11
            LV+V  H +  + +  C Y  YK++ W+  F  + V  D + V ++V N
Sbjct: 957  LVLVVAHAMSAALWTSCHYYSYKMDDWERPFSHFVVKTDSEGVWNIVEN 1005


>AF039045-11|AAB94202.1|  259|Caenorhabditis elegans Hypothetical
           protein F15E11.5 protein.
          Length = 259

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 411 NEEYLGARISSACHDVQYPAGAKICKENTANLEQYMHHVLKS 536
           N +      S+ C D+Q+P    + +EN   L Q M H++ S
Sbjct: 50  NADLFPTNCSTVCADIQFPYNNDLTEENLTVLFQNMKHLIGS 91


>AC024776-12|AAK68460.1|  263|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein3 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 186 ILCCSNLSFARQVPKECSKGPEVWCQSLKRGADC 287
           + CCS    A +V K C+   ++ C   KRG DC
Sbjct: 132 VFCCSET--ASRVGKVCNSHGQLGCPQGKRGLDC 163


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 NNTCIMYSNLTQLRKRCAESSACVITRNLT 597
           NN C+  S++    K   ESS C++  N+T
Sbjct: 99  NNECLYISSVNVTCKSDCESSTCILLNNIT 128


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 381  RQLKDIKDLINE-EYLG-ARISSACHDVQYPAGAKICKENTAN 503
            R   D  DL+ E E +  AR+   CH+++ P   K  K+NT N
Sbjct: 1540 RMEDDCLDLMYEIEQMNEARLPQVCHEMRRPLAEKQQKQNTLN 1582


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 381  RQLKDIKDLINE-EYLG-ARISSACHDVQYPAGAKICKENTAN 503
            R   D  DL+ E E +  AR+   CH+++ P   K  K+NT N
Sbjct: 1540 RMEDDCLDLMYEIEQMNEARLPQVCHEMRRPLAEKQQKQNTLN 1582


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,062
Number of Sequences: 27780
Number of extensions: 340484
Number of successful extensions: 1023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)