Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D11
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112...    30   0.88 
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586...    29   2.0  
11_06_0091 + 19967390-19969825                                         27   4.7  
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801...    27   4.7  
02_05_0883 - 32481502-32483085                                         27   4.7  

>01_01_0120 +
           1119319-1119447,1120565-1120632,1121682-1121928,
           1122430-1122498,1122782-1122907,1123326-1123406,
           1123484-1123561,1124084-1124319,1124399-1124545,
           1124864-1125152,1125231-1125352,1125713-1125749
          Length = 542

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 67  VPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVAC 246
           VP      L  S   SL  K+    V ++  +S  +V  LI S   +LG   + T+AV C
Sbjct: 255 VPAPSSYLLKSSGLKSLFVKASGVSVSIQVDVSNTKVDYLINSACEKLGVKAQDTYAVLC 314


>10_02_0148 -
           5859664-5859828,5859916-5860043,5860310-5860451,
           5860548-5860643,5860836-5860976,5861799-5861973,
           5862416-5862702,5862777-5862870,5863244-5863335,
           5863459-5863553,5863648-5863759
          Length = 508

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = -1

Query: 194 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 36
           +G +  T T+ESAA  HT  +G    +F    Y  L+  +K +  C+G++  +KY V  C
Sbjct: 89  EGARIDTPTLESAAGPHTTVDGKEVVNFASANYLGLIGNEKIIDSCVGSV--EKYGVGSC 146


>11_06_0091 + 19967390-19969825
          Length = 811

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/78 (21%), Positives = 31/78 (39%)
 Frame = +1

Query: 43  FTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMK 222
           +  L + + P     F    + +S CW  P  P  +++ +  V +I     I +      
Sbjct: 326 YNSLKIVVDPEWLPPFRVEKAYFSSCWMGPKFPAWLQSQVYIVELIMNDAGIDDTFPDWF 385

Query: 223 KITFAVACLLALSSVYAG 276
             TF+ A  L +S+   G
Sbjct: 386 STTFSKATFLEISNNQIG 403


>03_02_0387 -
           8016399-8016575,8016661-8016788,8017073-8017214,
           8017301-8017396,8017572-8017712,8017857-8018031,
           8018443-8018575,8018661-8018733,8018807-8018900,
           8019890-8019981,8020091-8020185,8020267-8020378
          Length = 485

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = -1

Query: 194 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 36
           DG +  T  +ESAA  HT  +G    +F    Y  L+  +K +  C+G++  +KY V  C
Sbjct: 89  DGARIDTPMLESAAAPHTTIDGKEVINFASANYLGLIGNEKIIDSCVGSL--EKYGVGSC 146


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 112 SLCWKSPSAPVCVKAALST-VRVINLIPSIHNRLGT 216
           S C  SPS+P+  + ALS   RV+ L PS H  L T
Sbjct: 109 SACADSPSSPLARRLALSVHARVLKLFPS-HLLLST 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,279
Number of Sequences: 37544
Number of extensions: 203389
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)