Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D11
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    34   0.036
U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    27   7.3  
AC006829-1|AAF60923.1|  258|Caenorhabditis elegans Hypothetical ...    27   7.3  

>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 336 QRQSCRC---RHTFSCHSFVT--TVTCVNARQSQETSYCECDFLHCSKAI 202
           +RQ+C+C   + + SC+S +   T TC N +QS   S C C     SK++
Sbjct: 25  KRQNCKCSPPQSSCSCNSAIQSQTCTCHNTQQSTSASNCNCVLKSNSKSV 74


>U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical
           protein F25B4.4 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 37  HLFTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKA-ALSTVRVIN 183
           H+F  +S    P+ +G     S++  L  KSPSAP   K   LS  R IN
Sbjct: 165 HVFVQMS----PVSHGFGKDASAKAVLTIKSPSAPTSTKGILLSGERTIN 210


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 162 FDGSRYKFNSINTQSPWNN 218
           FDGS + FN IN  SP  N
Sbjct: 228 FDGSPWNFNQINPASPKKN 246


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/68 (19%), Positives = 31/68 (45%)
 Frame = +1

Query: 40  LFTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTM 219
           L+  + +C++ +++     +S+ Y++  +   A +C+    +T   +   P I   L T 
Sbjct: 22  LYIMVLICLIKLRFHSKTYQSTFYTILMQHSIADICIMIFYTTTWGLRTKPGIREMLYTY 81

Query: 220 KKITFAVA 243
           +    A A
Sbjct: 82  QHFYVAAA 89


>AC006829-1|AAF60923.1|  258|Caenorhabditis elegans Hypothetical
           protein Y9C12A.1 protein.
          Length = 258

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  LRG*NKDIYLRICPSVLYLYST-EGFYLGLVGTLCV 121
           L G N+ +Y+R+ P  +++++T    Y  L+GT+C+
Sbjct: 78  LLGINESLYVRL-PRGMFVWNTLNSLYFLLIGTICL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,364,763
Number of Sequences: 27780
Number of extensions: 183115
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)