Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D10
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    88   4e-19
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    87   5e-19
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   0.60 
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   4.3  
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    24   5.6  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    24   7.5  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    24   7.5  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    24   7.5  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    23   9.8  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    23   9.8  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   9.8  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 87.8 bits (208), Expect = 4e-19
 Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 6/86 (6%)
 Frame = +3

Query: 36  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 215
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEV-GVPNLQVIKACQSLDSRGYLKTRY 59

Query: 216 AWRHF------TGI*QMRYEYLKFPA 275
            W  F       G+  +R EYL  PA
Sbjct: 60  NWGWFYYTLTNEGVEYLR-EYLHLPA 84



 Score = 34.3 bits (75), Expect = 0.005
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 268 FLHLPPEIVPATLKRSVRTETVRRG 342
           +LHLP E+VPAT KR VR    R G
Sbjct: 79  YLHLPAEVVPATHKRQVRPAAPRAG 103


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 87.4 bits (207), Expect = 5e-19
 Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 6/86 (6%)
 Frame = +3

Query: 36  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 215
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEV-GVPNLQVIKACQSLDSRGYLKTRY 59

Query: 216 AWRHF------TGI*QMRYEYLKFPA 275
            W  F       G+  +R EYL  PA
Sbjct: 60  NWGWFYYTLTNEGVEYLR-EYLHLPA 84



 Score = 34.3 bits (75), Expect = 0.005
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 268 FLHLPPEIVPATLKRSVRTETVRRG 342
           +LHLP E+VPAT KR VR    R G
Sbjct: 79  YLHLPAEVVPATHKRQVRPTAPRAG 103


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 311 LFRVAGTISGGKCRKFKVFIPHLLNTSK 228
           LFR       G+C+K +  +P LLN+ K
Sbjct: 80  LFRRQSNWKDGRCKKVESMLPQLLNSEK 107


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 155 VRDLLEIWMFGCMVVFLSYHDSLLE 81
           + +  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 QMRYEYLKFPALTS*NCTSNPEEVSAYRDST 335
           Q   E + FP+L +  C S+P +V+  R +T
Sbjct: 70  QRAEEKITFPSLWTNTCCSHPLDVAGERGNT 100


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 233 SKMPPCELFLNISS 192
           S +PPCE+FL+ +S
Sbjct: 141 SYLPPCEVFLDFTS 154


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 226 CLHANCSLTYPLDLSDCIALI 164
           CLH N SLT+P   S+   ++
Sbjct: 368 CLHLNASLTHPDSKSEASEVV 388


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 72  EYLFKEGVMVAKKDYHAPKHPDLEK 146
           E L   G +VA  DY A  HPD+E+
Sbjct: 99  ERLSALGNIVACNDYVALVHPDIER 123


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 104 SYHDSLLEEVLIDRNTVLFWH 42
           +YH  L +E+ I +N ++ WH
Sbjct: 331 NYHWYLKKEINIPQNALISWH 351


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 6   EDLVESWLSKMLMPKQNRVSIYEYLFKEGVMVAK 107
           EDL E +++  ++P     +IYE ++  G  +A+
Sbjct: 63  EDLREEFINDTVIPAAQANAIYENVYLLGTSLAR 96


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 126 KHPDLEKIPNLQVIKAMQSLKSRGY-VKEQFAWRHF 230
           +HP  EK+  L+ +KAMQ  + R + ++ Q   +HF
Sbjct: 70  RHP--EKLQKLRKMKAMQERQERNWSLERQRLVQHF 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,811
Number of Sequences: 5004
Number of extensions: 26962
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)