Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D10
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 87 3e-18
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 87 3e-18
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 83 4e-17
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 27 2.9
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 27 3.9
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 27 5.1
02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608 26 6.7
01_06_0739 - 31601656-31602233,31602777-31602906 26 6.7
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 26 8.9
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 26 8.9
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 87.0 bits (206), Expect = 3e-18
Identities = 37/65 (56%), Positives = 53/65 (81%)
Frame = +3
Query: 36 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 215
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 216 AWRHF 230
+W+++
Sbjct: 60 SWQYY 64
Score = 33.5 bits (73), Expect = 0.044
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1
Query: 265 NFLHLPPEIVPATLKRSVR 321
N+L+LP EIVPATLK+S R
Sbjct: 78 NYLNLPSEIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 87.0 bits (206), Expect = 3e-18
Identities = 37/65 (56%), Positives = 53/65 (81%)
Frame = +3
Query: 36 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 215
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 216 AWRHF 230
+W+++
Sbjct: 60 SWQYY 64
Score = 33.5 bits (73), Expect = 0.044
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1
Query: 265 NFLHLPPEIVPATLKRSVR 321
N+L+LP EIVPATLK+S R
Sbjct: 78 NYLNLPSEIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 83.4 bits (197), Expect = 4e-17
Identities = 36/65 (55%), Positives = 51/65 (78%)
Frame = +3
Query: 36 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 215
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 216 AWRHF 230
+W+H+
Sbjct: 60 SWQHY 64
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 265 NFLHLPPEIVPATLKRSVR 321
++L+LP E+VP TLK+S +
Sbjct: 78 SYLNLPSEVVPNTLKKSAK 96
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 66 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKE 209
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQE 132
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 54 NRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP 152
++VS++ +L GV+ AK YH + KIP
Sbjct: 107 SKVSVHLFLHSTGVIAAKFQYHQKLVDAVHKIP 139
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 269 KFKVFIPHLLNTSKMPPCEL 210
K K F+P++LN KM CE+
Sbjct: 589 KRKSFLPNMLNDEKMDDCEM 608
>02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608
Length = 276
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 45 PKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 197
P R+S Y+ + + MV DY P DL+ + +L + ++ +K++G
Sbjct: 144 PSAGRISGYDMVMQSWEMVCDADYEFPLQIDLQDVEVHVRGDLGYVTCLELVKTKG 199
>01_06_0739 - 31601656-31602233,31602777-31602906
Length = 235
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 36 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIP-----NLQVIKAMQSLKSRG 197
++ P R+S Y+ + + MV DY P + DL+ + +L + ++ +K++G
Sbjct: 146 VIHPAAGRISGYDVVMQSWEMVCGADYEFPLNIDLKNVEVHVHGDLGYVTCLEVVKTKG 204
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = -3
Query: 173 SFDHLEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLF 48
S + L + EIW++GC++ F + ++++++ + LF
Sbjct: 663 SLNKLVSLTIAEIWLYGCLLRFRCHFFTMVDDLSNEDFNTLF 704
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 42 MPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLE 143
+P + R I Y F+ +V + + PK PD+E
Sbjct: 269 IPDEVRTEIEPYFFEHASIVDEDNQKLPKLPDIE 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,342,898
Number of Sequences: 37544
Number of extensions: 170473
Number of successful extensions: 376
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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