Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D10
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 91 1e-19
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 3.5
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 3.5
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 3.5
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 3.5
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 3.5
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 3.5
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 3.5
Z68749-4|CAA92959.2| 179|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 27 4.7
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 27 4.7
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila... 27 4.7
AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical ... 27 4.7
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 26 6.1
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 26 6.1
AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily a... 26 8.1
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 26 8.1
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 91.5 bits (217), Expect = 1e-19
Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Frame = +3
Query: 36 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 215
M +PK + IYEYLF EGV VAKKD++A HP++E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 216 AWRHF------TGI*QMRYEYLKFPA 275
AWRH+ GI +R EYL PA
Sbjct: 61 AWRHYYWYLTDAGILYLR-EYLALPA 85
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 137 IWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQPTFH 15
+W F C+ V +S + +L+ R F+ QH+ +P H
Sbjct: 10 LWAFACLSVSISRRSEKGKCMLVPRERRHFFVQHVSRPHIH 50
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 16 WKVGCPRC*CQNKTVFLSMSTSSRRES 96
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z68749-4|CAA92959.2| 179|Caenorhabditis elegans Hypothetical
protein F56H11.2 protein.
Length = 179
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 146 LLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQP 24
L+ + +FG ++ F++Y+ S + +DR TV H+ P
Sbjct: 65 LVGVMIFGAVINFVNYYKSKKRQKELDRMTVESLLAHMALP 105
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 208 SLTYPLDLSDCIALITWRLGIFSRSG 131
S YPL L+DC LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 243 QMRYEYLKFPALTS*NCTSNPEEVSAYRD 329
++++E +KFPA+T C NP + SA R+
Sbjct: 92 EIKFEEIKFPAVTI--CNMNPYKNSAARE 118
>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
roughdeal) homologprotein 1 protein.
Length = 2049
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +3
Query: 9 DLVESWLSKMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLE 143
D V+ ++ K++ + +++S+ EY+ + ++ +K A +H D E
Sbjct: 1426 DYVKKYVEKLI--RNSKISVGEYMVRYATLLIRKASVAGRHTDRE 1468
>AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical
protein R11G11.14 protein.
Length = 404
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 63 KHGFVLASTSWTTNFP 16
+HG + AST WT N P
Sbjct: 79 QHGLLCASTDWTMNLP 94
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 93 VMVAKKDYHAPKHPDL-EKIPNLQ 161
+ V+ DY+APK P+ +K PNL+
Sbjct: 285 ITVSDVDYNAPKDPEFRQKYPNLK 308
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 93 VMVAKKDYHAPKHPDL-EKIPNLQ 161
+ V+ DY+APK P+ +K PNL+
Sbjct: 448 ITVSDVDYNAPKDPEFRQKYPNLK 471
>AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform b protein.
Length = 648
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 12 LVESWLSKMLMPKQNRVSIYEYLFKEGVMVAKK 110
LVE S +L +Q +++ +LF + +M+ KK
Sbjct: 405 LVERRSSNILQSRQKARTLHVFLFSDMIMITKK 437
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 12 LVESWLSKMLMPKQNRVSIYEYLFKEGVMVAKK 110
LVE S +L +Q +++ +LF + +M+ KK
Sbjct: 893 LVERRSSNILQSRQKARTLHVFLFSDMIMITKK 925
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,920,620
Number of Sequences: 27780
Number of extensions: 148129
Number of successful extensions: 364
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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