Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D10
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   0.58 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   7.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 143 LEIWMFGCMV-VFLSYHDSLLEEVL 72
           L++WM GCM+ VF +  + ++ +VL
Sbjct: 262 LDVWMAGCMMFVFAALGEFVVVKVL 286


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 38  VDAKTKPCFYL*VPLQG 88
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 38  VDAKTKPCFYL*VPLQG 88
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 38  VDAKTKPCFYL*VPLQG 88
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 108 KDYHAPKHPDLEKI--PNLQVIKAMQSLKSRGYVKEQ 212
           KD   P    + KI  PN+ +IK    L   G V E+
Sbjct: 242 KDAKVPIIVAINKIDKPNIDIIKVQYELAKHGIVIEE 278


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 14  SGKLVVQDVDAKTKPCFY 67
           SG+++++ V  K K C+Y
Sbjct: 373 SGRVLMRTVRGKEKTCYY 390


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 14  SGKLVVQDVDAKTKPCFY 67
           SG+++++ V  K K C+Y
Sbjct: 373 SGRVLMRTVRGKEKTCYY 390


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 189 SRGYVKEQFAWRHFTGI 239
           S+   KE  AWRHF  I
Sbjct: 392 SKSRTKES-AWRHFAAI 407


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -1

Query: 280 VSAGNLRYSYLIC*IPVKCLHANCSLTYPLDLSDCIALITW 158
           ++ G +   +LIC +P  C++   S            ++TW
Sbjct: 272 ITVGVIMGVFLICWVPFFCVNIVTSYCKTCISGRAFQVLTW 312



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 155 VRDLLEIWMFG 123
           V DLL  W+FG
Sbjct: 84  VNDLLGYWVFG 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,709
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)