Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D09
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   0.86 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   4.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   6.1  

>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 173 EYSYTHTYANYCHFNSEMYTFAQYHFVTDTILTLPSLKYVTNN 45
           +YS+  T  N+ +   EM     YHF       L SLK VTNN
Sbjct: 98  DYSHEITIFNFKYAQQEMQNEKLYHFAKLLEPALESLK-VTNN 139


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = -3

Query: 254  PH*LSTICYLLIIKFIFKT*QNHSCPHEYSYTHTYANYCHFNSEMYTFAQYHFVTDTILT 75
            PH    I  +L+    F    +   P +      YA  CH  ++   + +  F+ + ++T
Sbjct: 1198 PHISPEIIQILLNLAEFMEHDDKPLPIDIRTLGAYAAKCHAFAKALHYKELEFIEEELVT 1257

Query: 74   LPSL 63
             PS+
Sbjct: 1258 KPSV 1261


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 61   FSDGNVNIVSVTKW 102
            F DG++ +V VTKW
Sbjct: 1334 FHDGSIRLVVVTKW 1347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,457
Number of Sequences: 5004
Number of extensions: 25909
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)