Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D09
         (358 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    34   0.11 
BC125157-1|AAI25158.1|  406|Homo sapiens FLJ39822 protein protein.     28   7.4  
AK097141-1|BAC04962.1|  384|Homo sapiens protein ( Homo sapiens ...    28   7.4  
AC019197-1|AAY14946.1|  384|Homo sapiens unknown protein.              28   7.4  

>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/96 (22%), Positives = 46/96 (47%)
 Frame = -3

Query: 344 HYDMQLYVFFVINL*FNNYTHQ*TNLH*VCPH*LSTICYLLIIKFIFKT*QNHSCPHEYS 165
           H  M ++ +  ++   + Y H  T++H  C H + +  ++            H+  H ++
Sbjct: 254 HIHMHIHTYTHMHTHMDTYPH--THIH-TCTH-MHSHAHINTHTHAHIHMHMHTHTHTHT 309

Query: 164 YTHTYANYCHFNSEMYTFAQYHFVTDTILTLPSLKY 57
           YTH +A + H N+ M+T+   H  T T + + +L +
Sbjct: 310 YTHAHA-HIHINTYMHTYTYTHIRTYTHIQMHTLTW 344


>BC125157-1|AAI25158.1|  406|Homo sapiens FLJ39822 protein protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 152 YANYCHFNSEMYTFAQYHFVTDTILTLPSLKYVTNNKYADF*F 24
           + NYC  N ++ TF ++ +    ILT P   +VT    A+  F
Sbjct: 231 FENYCR-NDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFF 272


>AK097141-1|BAC04962.1|  384|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39822 fis, clone SPLEN2011830. ).
          Length = 384

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 152 YANYCHFNSEMYTFAQYHFVTDTILTLPSLKYVTNNKYADF*F 24
           + NYC  N ++ TF ++ +    ILT P   +VT    A+  F
Sbjct: 209 FENYCR-NDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFF 250


>AC019197-1|AAY14946.1|  384|Homo sapiens unknown protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 152 YANYCHFNSEMYTFAQYHFVTDTILTLPSLKYVTNNKYADF*F 24
           + NYC  N ++ TF ++ +    ILT P   +VT    A+  F
Sbjct: 209 FENYCR-NDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFF 250


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,721,383
Number of Sequences: 237096
Number of extensions: 815822
Number of successful extensions: 1383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)