Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_D09
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical p...    29   0.95 
U00036-13|ABC71803.1|  479|Caenorhabditis elegans Hypothetical p...    29   0.95 
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    28   1.7  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin...    27   3.9  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    26   6.7  
Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine rece...    26   8.9  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    26   8.9  

>U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical
           protein R151.7a protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 125 EMYTFAQY--HFVTDTILTLPSLKYVTNNKYADF*FI 21
           EMYT  QY  HF TDT ++L S+ Y+   ++    F+
Sbjct: 282 EMYTRPQYTIHFQTDTPVSLRSVIYIPQTQFNQLTFM 318


>U00036-13|ABC71803.1|  479|Caenorhabditis elegans Hypothetical
           protein R151.7b protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 125 EMYTFAQY--HFVTDTILTLPSLKYVTNNKYADF*FI 21
           EMYT  QY  HF TDT ++L S+ Y+   ++    F+
Sbjct: 282 EMYTRPQYTIHFQTDTPVSLRSVIYIPQTQFNQLTFM 318


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 354 IFITL*HAVICFFCYKFII*QLYSSVNEF 268
           I ITL +  +C +C KFI  QL S  N+F
Sbjct: 141 IKITLIYEALCPYCQKFIANQLGSVFNQF 169


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 168 IFMWARVILLRFKDEFDY 221
           I+ W RV LL FK+E DY
Sbjct: 173 IYGWDRVALLYFKNELDY 190


>AF025452-1|AAB70944.1|  411|Caenorhabditis elegans C-type lectin
           protein 2 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 176 HEYSYTHTYANYCH-FNSEMYTFAQYHFVTDTIL-TLPSLKYVTNNKY 39
           HE S  + Y NYC+ F+ ++Y+F     + +     L S+     N+Y
Sbjct: 150 HEDSCYYNYNNYCYTFHRDLYSFTTAQTICEEECGNLVSIHSANENRY 197


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 217 SNSSLKRNKITRAHMNIHTRTHTLIIVILIVKCTLS 110
           S +SL  +K T +   IH  THT  I++ +V   +S
Sbjct: 33  SLASLPFSKTTPSFFQIHRHTHTHTILVFVVHFFIS 68


>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -3

Query: 191 NHSCPHEYSYTHTYANYCHFNSEMYTFAQYHFVTDTILTLPSLKYV 54
           NH    E      Y   CH +     F ++H   D +L  P LK V
Sbjct: 255 NHLGCLEQCLVAGYDQSCHCSPFFNRFTRFHCSIDELLNCPKLKEV 300


>U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 3 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 167 SYTHTYANYCHFNSEMYTFAQYHFVTDTILTLPSLKYV 54
           SY H  + Y +FN  ++ F Q+ ++   I     + YV
Sbjct: 2   SYEHCISGYTNFNENIHYFYQFAYLFTAICINYRILYV 39


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 257 CPH*LSTICYLLIIKFIFKT*QNHSCPHEYSYTHTYANYCHFNSEMYTFAQYH 99
           CP   S + +  I++   K  QN SCP  YS+        H+  +   FA+++
Sbjct: 569 CPKCKSVVLFDEIVEKNEKKTQNRSCPCGYSWCRHCNKVPHWPLKCGDFAEWN 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,558,059
Number of Sequences: 27780
Number of extensions: 143016
Number of successful extensions: 318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)