Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_D08
(203 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 82 5e-17
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 81 2e-16
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 78 9e-16
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.097
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 1.2
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 2.8
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 2.8
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 2.8
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 2.8
06_02_0040 + 10882897-10884744,10885568-10885666 26 4.8
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 26 4.8
09_06_0294 + 22089915-22091333 25 6.4
02_03_0037 + 14215616-14216941 25 6.4
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 25 8.4
06_01_0500 + 3584743-3585516 25 8.4
06_01_0155 + 1152607-1152721,1152781-1154129 25 8.4
06_01_0152 + 1136202-1136316,1136376-1137583 25 8.4
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 25 8.4
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 25 8.4
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 82.2 bits (194), Expect = 5e-17
Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Frame = +3
Query: 15 GD-RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 191
GD R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIV
Sbjct: 162 GDLRCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIV 220
Query: 192 LEKV 203
LEK+
Sbjct: 221 LEKI 224
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 39 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 54
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 39 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 54
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 78.2 bits (184), Expect = 9e-16
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 15 GDRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIV 191
G+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIV
Sbjct: 63 GERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIV 121
Query: 192 LEKV 203
LEK+
Sbjct: 122 LEKI 125
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 31.5 bits (68), Expect = 0.097
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 14 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 130
+R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 183 KRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 14 RRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 115
+R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 282 QRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 90 REQRWADKEFKKAHMGTRWKANPFGG 167
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 106 PTRNSKKPTWVRDGRRTPSVVHL 174
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 145 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 56
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 164 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 36
T ++P H+ + +G S A ++ VLAR ANT + +
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGF 225
>06_02_0040 + 10882897-10884744,10885568-10885666
Length = 648
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 47 TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEME 148
TSG+ H ++ A G++ I PH Y M+
Sbjct: 337 TSGFRHFLISQSVDPSGAKGKELITSGPHPYSMK 370
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 50 SGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGEPLR 163
S SHG+Q S+S A QGI S E E P R
Sbjct: 571 SAASHGSQDLPSNSSEAEKMQGISSSCSISEDENSPAR 608
>09_06_0294 + 22089915-22091333
Length = 472
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 114 PCRPIAARDDDSRACAPCEYPEVYP 40
PC+P AA + DS P P YP
Sbjct: 165 PCQPAAAANLDSTLTLPTMNPTSYP 189
>02_03_0037 + 14215616-14216941
Length = 441
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 45 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWK-ANPFGGASHAKGIVLEK 200
+PR + A K + R+E+ +KE +K + R + +NPFG A + ++ K
Sbjct: 303 RPREVVLATKGDDGRKEEE-KEKEEEKLEIQPRTRTSNPFGAARPREEVLAAK 354
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 6 SARGDRVRAIVMGKPRGIRTARKHVNHRR 92
+A DR R +V G PR R AR+H RR
Sbjct: 45 AAGADRRRPVV-GDPRRRRAARQHGEDRR 72
>06_01_0500 + 3584743-3585516
Length = 257
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 168 HHRRGSPSISYPCGLF*IPCRPIAARDDDSRACAPC 61
H + P G I RP+ + DDDS C+ C
Sbjct: 158 HGSLAGTGMDAPAGGERIGVRPMESSDDDSTFCSRC 193
>06_01_0155 + 1152607-1152721,1152781-1154129
Length = 487
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 72 CAPCEYPEVYP 40
CAPC PE YP
Sbjct: 177 CAPCPMPECYP 187
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 72 CAPCEYPEVYP 40
CAPC PE YP
Sbjct: 177 CAPCPMPECYP 187
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 57 IRTARKHVNHRREQRWADKEFKKAHMGTRWKANP 158
+ ++ K V R+++WA K+F TR + P
Sbjct: 61 VESSEKEVVEDRKRKWAAKKFASGSSSTRPRLAP 94
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 152 RLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 48
+LP V FF ++ S++ +M+ V + N PR
Sbjct: 961 KLPRLKEVEFFGHVIVDSVVESMVAVCKKHPNKPR 995
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,853,144
Number of Sequences: 37544
Number of extensions: 131341
Number of successful extensions: 408
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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